RnoINT0161420 @ rn6
Intron Retention
Gene
ENSRNOG00000007710 | Usp20
Description
ubiquitin specific peptidase 20 [Source:RGD Symbol;Acc:1305621]
Coordinates
chr3:9845415-9848517:+
Coord C1 exon
chr3:9845415-9845509
Coord A exon
chr3:9845510-9848483
Coord C2 exon
chr3:9848484-9848517
Length
2974 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TCCTTTGCTCCCCTGTGCAGGTG
3' ss Score
12.37
Exon sequences
Seq C1 exon
GTTTGTGGTATCCTGTACCCCCAGCTGGTTTTGGGGACCTGTTGTCACACTGGAAGACTGCCTGGCTGCTTTCTTTGCTGCTGATGAGCTGAAGG
Seq A exon
GTGAGTGGCCCGGCTGTAAGGAGAGGACTGACTGTCGAGCCCGTAGGGGCTGTGCCCCAGCTAGCCTGCCGCCCACGCTTAATGCACCGAGGGCCACTTGGCCTTATGGGACGGACCCTGTTCGATTCCACTGATAGTGCATGCCTACAGCCCAGAGCTTCAGAGGTAGAGCAAAAGATCGGGCTTGAGGGTCATCCTGGGCTATATAGTGCGCTCAAGACCTCACTGCCTGAGGCGAGGCCTGGGCTACATGAGAAACAAAACAAAGGAGATACATAAATGTTCACCTGCTATCTATCTACTAGGGCATGCTGGGAACCTCCCAAACTGCTGATCTGTCCTTATTTCCCATCAGATCAGTGGGCAGAAGGGACGTTTCACTTTAGCTCTGTGCTTCCTTGATTGATTGTTTGGTTTTCGGTTTTGTTTTGAGACAGTCTCATGCAGCCCAAGCTGGCCTCATATTCATTGTGTAGGCCACATTGGCCTTAAACTCTAGCCTCCACTTCCTCTAGCTGAGGTTGTTGGTGTGCACCTCCATGACCAGCTTGGATGCTTAAATGTAGGTTAAAACTATTTCTCTGTGCACTTAGTGTGTGCAAACCGCTATCGTAGGATGGAGTCTGAGGACAACCTGGGGTTGATTGTCCTCCTAGTGTGTGGGTCTTGGGCTCAAACTCAGGTCGTCAGGCTCGGTGGCCAGGGCTTTACCTGCTGATCCGGGTATCAGCCTCCTGATTTTTACTTTACTTTTTTCTCCAGTTGTAAAACTACACCATATTTTATAGTTTACAAGTGTTGTGTACATTAACATCACTATGCCGCTGCCGCCACCTCCATTCACAATATTTTCATCTTGCAATATAAAACTATATCTATCAAACAGCTCCTGCCCCCTTCTCCAGTCCCTGATAGCCAGCGTCCACTTTGCTGTGTGCTCCCCCCACATCCCACACACATAGCATTTTTTGGGTTCAGGAGATTGACTGCAGAGCCTTGTGGTTGCGGGCCTGTGTTCTAGCACAGAGCCACACCCCAGCTGGTGTACTTTCTGAGTGTGAGACTGACTGACGGAGCCTAGTGCCCTCAGAGTTCCCTCGATGGCAGCATGGCTCAGTTTTCTTTCTATTTTTAATCTGTCTTCTGGATAAGATATGGACAAGAATTTCCATTTTTATCTGTCTTGTGGACAGACCATACCCTCTGTGACTCCATCAGAGTGGACGTGGTCCACCCCTACATCAGCTGCCGTGAGTGCCACTGCCGTGGCCCTCTGCCAGCACTGAGAGTGTCCTCGTCCGCATGTGCTTAGCAGTAGGCTTGCTAGATCCGTGGAACTCCGGCTCCCCCAGGGTCTTGCCAGCTCATTGCAGAATAGTTGCAAGCTTCCTGGGCCTGAGGCGTCACCAACTGTGGTTTTGGTCTGCATCCTCTGATAAGTGATACTGAGCATCTTAAACATGTTTGCATGGGGTGGGTGGACGTGGGGCTGTTCAGCTTCCAGCATCCACTGGGCAGCTCGCAACCATCCTTGACTCCAGTTCCAGGGGACCCAGTGCCCTCTTCGGATCTGCCCAAGCACTGCATATGTGGTACACAAATAGACATGGTGGAATACCATACACGGAAAATAAAATACATAACCTAAAAGGAACCTGTTCGTCAGTGGGAGTGGGCGATCACTCAGTGGGCAATGTGTTGGCTGAGCCCAAGTCCCCAGCAGCCCGGTGAAAGCCGGCTATGGTGGTATGTGTCTAACTCCAGTGCTCAGGGTGGCCAGGGCCTTACTGGCCAGCCAGTCTATATGAATTCCAGGGGTTTGGTCAGAGACCGTCTCCAAGCATAATAGAGGAGGATGAGCTAACGTGACCTCTGGCCTCTGTACATGCGCACACAGGTGACTTCTCAAATGTGTACTCATAACTCGAGTGCGCACACATGGATCTCCCTCTTTGGAGACATCTCTTCTAGTCTTTCGTGTTGAGGTTAGGAGTTCTTTATATTAACCCCTGTCGGGTACAGATTTGAAGAGGTTGGAGTGTGTCTCTGTTGGAAGAGAGGTTGCCTGGTTGCCCCAGGCCCTGGGCTGAACTCCCAGCCCTGCACAAGCGTGGTAGTAGGCCCCTGTGGTCTAGCACTCTGGCGACAGAGAGGACGGTCTGGAGCTCTCACTTGTTCTAGCTGTGTGTGGGAGGACGCGAGACCCTTTCCGGGAGCACCGAGACACGGTTTGTGACCGCTCTTCTCTGCGTGCATGGTTTTTCTTTTTGTATTTAGCTTTACTGTTTTAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTGTGCGCATGTGCAAAGGCCAGAGGTCTCCTGAGGTATTTTTTGTTGAATGTTTTATCTGAATGTATGTGGTGCCTACACAGTGCCTACAGAGTTTAGAGACAGAGAAAGACATGGGATCACATGGGACTGGAGCTGAGGGTTATTTCAAGCTCCTGATTTTCCTCCACCTCTTTAATGATGAGAATATGGGTGGGAGCCATTACACCTGGAATTTTATAGCACCTACACTTACTTGGATTTTTGATCTATTTTTTTTAATATTTTTATTGCTGTATGTGTGTTCACAAGCCTCTTTGCACAACTGGAGGCCAGAGGACAGCTTGAGGGAGTTGGTTTGTTTTGTAAGCAGTGTGAGACCATCACCGGCCTCCCTTGCTCTTGTGTCCCCTTCTGTTTTGCCTCTGCCTTTTCATCTGTTTTTAGCCCTGCCCATAGGGGAGTTTCAATGCTTTTAGGGTCAAGTATTCTGGGTTTTTTGTTGTCATTGTTGTTTGGTTGGTTTTTTTCTTTCTGGTTCTATCTGGAATCTTGTCACTTCCTACCAGTTTTCTTTCACCTTGAACGTAATTCACTTTTGCCCTTTTCGTCCCCATCTCCCCTGCTGACCTCTGGTCCTTTGCTCCCCTGTGCAG
Seq C2 exon
GTGACAATATGTACAGCTGTGAGCGCTGTAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007710:ENSRNOT00000010786:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(5.9=100)
A:
NA
C2:
PF0044324=UCH=FE(2.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]