RnoINT0162644 @ rn6
Intron Retention
Gene
ENSRNOG00000007422 | Vav2
Description
vav guanine nucleotide exchange factor 2 [Source:RGD Symbol;Acc:1306285]
Coordinates
chr3:5830820-5832029:-
Coord C1 exon
chr3:5831897-5832029
Coord A exon
chr3:5830930-5831896
Coord C2 exon
chr3:5830820-5830929
Length
967 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TCCAGCCTCTGTCCCCACAGTGG
3' ss Score
8.82
Exon sequences
Seq C1 exon
GTACCTGTTCCTGTTTGACAAGGTGGTCATCGTGTGTAAGAGGAAGGGCTACAGCTATGAGCTGAAGGAGGTTATTGAACTGCTCTTCCACAAGATGACTGATGACCCCATGCACAACAAAGACATCAAGAAG
Seq A exon
GTGGGTCTGGGTCTGCAGAGGGGCACACATGTACACATATACACATATATACATACACACATGTACACACGTACACATACACATGTACACATAGACACATATACACATATACATATACACATATATACATACACATGTACACATAGACACATATACATACACATATACACACATACACACATATACACATACACACATGTACACATACACACATATACACATATGCACATACACACATAAACACATACACACATAGCAGGCCCCTACATATGTAAAAGTGCACACAGCAGGGTCCCTGCATACATACACACATGCATGGGCACAGTATGGCACATATGCATACTCAACAGTATGTGCACACACACATACATGCATACATACAGCAGGACCCCATATATATGTGTGTGAACCCAACAGGAGCTCTGCATGCACATATGCATGTATGCATGTGCACCTGTACACCTGTACACACCGGTCCATGTGCAGAACATGATCTATAGGTCACAGCACTCCACACATGACGTTTACACATGTGAAAGGAGCTATGAACATCTAGACACAGGCTTGGGTGCGCATACACATACACTGTTCCTATGTCTAGGAACAGACACAAGTACCAATGCACATATGTGCACTTCATCACAGTACAGGTACACATGTTACACAGGAAAGCACACATACACTTTGACACATGTTCCTAAACACCTTCACCCATGAGAGCTACCCTGGCCTGTTCAGGCAAGATAACAGTGCACCCACAGCCTCTGGTGTGGGAGGACACACACAGGCATGCAACCAGGCAAGAGTGTATGTGTCTATACACAAGAGTGTGTTACACAAGGCATAGGCACGCGCGCACACACACACACACACACATACACACACACACACACACACAGTGCTAGTGAACTTGTGTACACCCTGTCTCCTACAAAGCCATGCCAGCTTCCAGCCTCTGTCCCCACAG
Seq C2 exon
TGGTCCTATGGCTTCTACCTGATTCACCTCCAAGGGAAGCAAGGCTTTCAGTTCTTCTGCAAGACGGAAGACATGAAACGGAAGTGGATGGAGCAGTTCGAGATGGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007422:ENSRNOT00000009893:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(43.1=100)
A:
NA
C2:
PF0016924=PH=FE(35.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTTCCTGTTTGACAAGGT
R:
GCCATCTCGAACTGCTCCATC
Band lengths:
238-1205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]