GgaINT0124877 @ galGal3
Intron Retention
Gene
ENSGALG00000002699 | VAV2
Description
NA
Coordinates
chr17:7737708-7738894:-
Coord C1 exon
chr17:7738762-7738894
Coord A exon
chr17:7737818-7738761
Coord C2 exon
chr17:7737708-7737817
Length
944 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
CTTCTTGTTTCCTTCTGCAGTGG
3' ss Score
9.48
Exon sequences
Seq C1 exon
GTATTTATTTTTATTTGATAAAGTGGTGATCGTCTGCAAAAGGAAAGGATACAATTATGAGCTGAAAGAAATAATCGAGCTGCTCTTCCACAAGATGACCGATGACCCTATGAACAACAAGGACATTAAGAAG
Seq A exon
GTAGGTGGAGCAGAGATCAGCTCTGCCAGAGAGCATTCTGGAGCTGCTCTGGCCAGTCCTTGGGTAGCACATTCCCAGCAGCCTTTTTAAATAGAAACAGAGCTTGCAAAATACTGGAACACAAACACTGAGCTGGCAGGGCAGCCTTACAGAGAGTTGGGAAATGCTTAGGTGTACAGGGCTGGGCTTGATCCTCTGACCTCCGTCTGTGCAAAACAGCCCTGGAGAGGATGGATGGGAGGGAGGAGGGAGAGGGAGGCAAGGGGATGTCAGCCCTGCTGCCAGCTTGCCAAAATCAGCTCAATGAGTGCACCTGCCCCTGAAGAAGCAGCATTTTGCTGGTGTCCAGCTAGCAGAGAGGCAGGGACTTGTGTGCAGGTAGATGTTGTATGGATGGGGCACATGACACTGGGTGTGAAAAGCCAGTTTTGCCACTTGGATGCTGAAGAAATGCTGCTAGCTTTGTGTTTTAATGCAATATATTTCCTCTTTGCTCTCCCATGCTTTCCAGTCTCATGGAAAAATGGTAAGCAAAGCACACAGTTTTCTCTCATGTTTTTCTGTGCAGCGTCGTAATGAGACAGGCAGAGCATATGTGTGTTGGGCAGGTCAGATGTTCCTCCTGGGCTGTCAGTTGTTGTCAGGGAGAGAGATAATGGCTGGGGAGGATCCACTGGAGCAGAAAAATCCCACTTCTCTCATCTGCCACCATAAAATCCCATTTGGCCCTAGTGCGCAGTGCAGGGCCGATTCAGGCATCATTAACTGTGATGTGCTGTAGAGATACGGAGTTGTTCTTCCTCCTTCCCTACTGTTATCCTTGCAAAGGTGCAGAGAAAAGGGGCGGGCGCTGAGAGCAGCTCTCGAGAAGTGTGAATAAAAGCTCATTGCTGCTCAGGTGCTGGGAGCACAGCAGTGTGATCGCTTCTTGTTTCCTTCTGCAG
Seq C2 exon
TGGTCGTACGGCTTCTACCTGATCCACCTGCAGGGAAAGCAGGGCTTCCAGTTCTTCTGCAAGACAGAGGAGATGAAGAGGAAGTGGATGGAGCAGTTTGAAATGGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699:ENSGALT00000004255:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(43.1=100)
A:
NA
C2:
PF0016924=PH=FE(35.3=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGATAAAGTGGTGATCGTCTGCA
R:
ATTGCCATTTCAAACTGCTCCA
Band lengths:
230-1174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]