HsaINT0179934 @ hg38
Intron Retention
Gene
ENSG00000160293 | VAV2
Description
vav guanine nucleotide exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:12658]
Coordinates
chr9:133787246-133788486:-
Coord C1 exon
chr9:133788354-133788486
Coord A exon
chr9:133787261-133788353
Coord C2 exon
chr9:133787246-133787260
Length
1093 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CTCCTCTCCATGCTTCCTAGTCT
3' ss Score
6.12
Exon sequences
Seq C1 exon
GTACTTGTTCCTGTTTGACAAGGTGGTCATCGTCTGCAAGCGGAAGGGCTACAGCTACGAGCTCAAGGAGATCATCGAGCTGCTGTTCCACAAGATGACCGACGACCCCATGAACAACAAGGACGTCAAGAAG
Seq A exon
GTGGGGCCTTCCGGGTCCCCCCTGCTACCCAGGAACGTGGGGGTGGCCTGGAGAGAGGCACTGGGTTCCAGACCCCAGGGGAAGGGGACTCGAAGTCAGCCGCTGATGCTGGCCGGGTGGGTTGGGGTGGGCGTCTCCGCTCTGCAGGAAGGCTCCTCTCTGAGTCACTGCCTCGCCGTCGTGACCACTGCTCATAGCAGGCCTGCTCCTCGCCGGGCCCAGCGCCCCCCAGAAAGGTGGGCAAGACCAGAATCCCACTCCCCAGTGAGGCGACTGAGGCAGAGGGGAGAGGCCACCCCAAGGCCTCTAGTGAGGGTGGGACTTTCAACCTTGGCTTTCCATCTGGCCAGCCTGACTCTAGCCCATGTTGTCCCTTGTAGCAAGCAGGCTTTCCTCTCCCGTCCCACCCTGCGGTGCTTGGAGGAGGGCTGTGGGTAGGTCTGGCTGTGGCTTGTCCGAGACTCTACATGTAGCTGGCTGGGGCCTGTGGCTGCTGGGGTGGGGCCAGGGCTGCAGGGGTGGGGCCTGTGGCTGCTGGGGCGGGGCCAGGACTGCAGAGGTGGGCCTGTGGCTGCCAGCGGGTGGGGCCAGGGCTACAGGGACGGGGCCGAAGCTGCTGTGGGGCAGGACCATGGCTATAGGGCTATTGCTGGCTGGCTGTCTGGTTCAGTCCTGCTTCAGCTGAGGCTTCTGCCCATGGCACTTGAGCAGCTACCGTGTGCAGCCCTGGTGGGGTGGGGGGCGGGGGTCAGGAGCCCTTGTTCTGAAAGTCCAGTCCCTGGCCTCCAGGGCTGGCAGTGTAGCCCTCGTCCAGACCCAGCAAGTGCAGACTGGATGAGCTGTTGAGGGTGACCCTCCCTGCCCTCATGCCCAAAACAAGTAACTGGGGCCCATGAGGCAGTCCTGCCACCAGCACCCAACACTCTGGGAAGAAATTCCTTTCCCCACTGATCACCCCACCCCCAGCCTGGGCACTGGGGGGTGTTCCACCTGCCAGGGCTCCTGGCGCCTCCACACTGCGGCACCCACCACAGGGCCGGGCTTAGCCTCTCACTGACCGTCTTCCCCTTCCTCTCCTCTCCATGCTTCCTAG
Seq C2 exon
TCTCACGGGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160293:ENST00000371850:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(41.1=100)
A:
NA
C2:
PF0016924=PH=FE(3.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains