RnoINT0162856 @ rn6
Intron Retention
Gene
ENSRNOG00000015408 | Vil1
Description
villin 1 [Source:RGD Symbol;Acc:1307048]
Coordinates
chr9:81705019-81706213:+
Coord C1 exon
chr9:81705019-81705177
Coord A exon
chr9:81705178-81706033
Coord C2 exon
chr9:81706034-81706213
Length
856 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
CCTTCCCCTTATGCCTGCAGGGA
3' ss Score
9.7
Exon sequences
Seq C1 exon
GGCAGCCAGGCCAGCCAGGATGAAATTGCAGCCTCGGCTTACCAAGCTGTCAACCTGGACCAGAAGTACAACGACGAGCCAGTGCAGATCCGGGTCACGATGGGCAAGGAGCCGCCGCACCTCATGTCTATCTTCAAGGGGCGCATGGTGGTTTATCAG
Seq A exon
GTGCAGCTGCTGAACTGAGAGATGGCATCATCGGGAGATGGGAAGGGGTTGTGTGGTGGGCATGAGGCTGGGGCAAAGCCTGTTCCTCACAGGAGAGGTCCCTTGTCATGTATATACTTGGTAAGAGAAAGTAGCATGTTTGCTTTAGGGTTTTAGGGAAGGAACCTTCAATGTGTACAAATGTTATTTGCTCTTCTTGATCTCTGCTACATGAGAAAGGAGGCTTTGCTGTACCTTCCCAGCTGAATGAACTAGACCTCTCGTGCAGCTGTTTAAAGCAATGATCTCTTTGTGGCAAACCTAAGCACACAGTCTTTTGCAGCTCAGGAAGTGAAGCGAGACAGGACAGGAGAGATGACTCATTGGGAAAGGACGGTCATAGGGCTCTGCCTAAGTGGTGACTTCCCAGCTTGGAGCACTGTGCAGTTAAATGCCAGAGATGGAAATTGAGTTCAATGGGGGGAGGGCAGGCAGGACATAGTAAGCAGGGAGGCAGGCAGAGGATTCATGAGGAATTCAGAGGACGTCTAGACATTTGGGAAGAAACTAGAGAGCTCTCTGGAGGTAAAATGGGGGCTTACAGTGCAGGGCACAGATGCCCTGAGGGTTTAGAAAAGGAAAGAGAACGCAAAGTTAGTTTGTGTCTTCATTTTGAATTTCATGGGCCTTTAAGCAGGGTACCTGGGTTTTACATCAAGGCAGTTGGGAGTCATTGAAAACCTTTGAGCAGCAGAGTGCCGAGATCCAAGATGTCTTTGGGCTGGCTCTTCACCCCTTTCCCTCTCGGCTGCTCTTCACATCTTTGTGTGCCCTTCATACTTGTCCCTGTCTTCCCGCCTTCCCCTTATGCCTGCAG
Seq C2 exon
GGAGGCACCTCCCGAAAGAACAACGTGGAGCCCGTGCCCTCTACAAGGCTGTTTCAGGTCCGAGGGACCAGTGCTGATAACACCAAGGCTTTTGAGGTTACAGCCCGGGCCACCTCCCTCAACTCCAATGATGTCTTCATACTCAAGACTCCGTCCTGCTGCTACCTGTGGTGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015408:ENSRNOT00000021432:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(48.6=56.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGCCAGCCAGGATGAAAT
R:
CTTTCCACACCACAGGTAGCA
Band lengths:
334-1190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]