RnoINT0167800 @ rn6
Intron Retention
Gene
ENSRNOG00000001323 | Zfp157
Description
zinc finger protein 157 [Source:RGD Symbol;Acc:1359435]
Coordinates
chr12:18468309-18476550:-
Coord C1 exon
chr12:18476455-18476550
Coord A exon
chr12:18468419-18476454
Coord C2 exon
chr12:18468309-18468418
Length
8036 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GGTTTTTAATATCGTTTCAGGTG
3' ss Score
7.96
Exon sequences
Seq C1 exon
GGCACTGTGTAACCAAACCGGAGTTGATCTTGAGGTTGGAGCATGGATTCCGGCCATGGAGCATCGGAGGAGACGCTTCTGTCTGGAGTCTCCCAG
Seq A exon
GTCAGTGACTGAACTGGGGAGGGGACGTCAACGTGGACGACTGCTCACAGGGCATTGGTCATCTTGGACTTGGACTGTCCTCACCATTTATTTTATACAGTTTCCAAACGAGGATCTTTGTGTCAGTTTGTGTCCTTTGTTGTTGTTGTTGAAGTCAATTTTCCTAAATTTACTTTAAAAAAAATCATCTTTGTTCTCTTAGATATTTTTGTCATTGCTTTGAGATGGGGTCTAATATAACTTAGACTGCCCTGCAGCTTGCCCTGCAGCTTGCTATATAGGCAAGACGGAGCTCAAACTCTGCGTTTTCCTCCACCTCCCACTATCAGGATGTGTCGTCATACTTGGCCTTGTCTGTAGATTTGTTAGTTAGATACTTTGCCTAAAAGTTTTATCTGAATTCTTAATTGTAATATTGAAGATTCCTTACTTTAGGGCGTGGTCTTGATCTGGAAGTTTAATAGCAATAATTAACACTCAGATGCATCTCTTCTTGAAGGGGCTTACAGTCAGCGAGGGGAGAGCGACACAGTCATATAACGTACCACAGAGAGATGAAAGACACAAAGAGTATTAACCCAGAGAAAGGCAAAAGAGCAGATGGAGTTTTATTTTAAGAAAGGCATAAAGACGCTGTTGAGGAAATACTCATTTATTTTATTTTAGTGTTGTGATTACTCTTTTTAAAAACTTTGAACTAGCTGTGTGGTGGTGGTGGTGGTGGTAGCACAAACCTTTGATCCCAGCACTCAGGAGGCAGAAGCAGGCAGATCTCTCTTGAATTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGATATCCAGGGCTACACAGAGAAACCCTGTGTTGAAAGAAAGACAGAGAGGTGGAAGGGGGGAAGTGGGAGGGGGAAGGAGCGAGGGGAAGTTAGAATGGGAATTGGTAGCCTAAAAACTATTAACTGAATTTTTTTTTTTAATTAGAAAAGAAAGTACTGGAAGTTTAAGGATGGGATTGCAGATAAGTTTTTTTCTATGCTAGTACGTGAATGCCCAATGTCATTGTCACAAATGAGAGAATGTTTTCCAAGGAGAGCAAGAGAGAAAGAACATTTGGGATCAAGAGGTGACAGGGCAGTATGCCCTAGAACAGAAAAGCTATTGAGGAAAGTATACACGTGTCACAACGTCTATCCACAAATCCCAAGTAGTAATGAGCTGAATGCTACGACTAGGTAGTGACATAGTGTACAAAGTGCTCTGCTCTGATCAAGTGGCATTCCTTGTCGTGGAAGAAACCTGTGACACTGGCAAGTGTTAATAGAGAAGTAACTTCTGTGATGGTGTCTTGTATATTCTGGCTTAATAGATTGAAAAATAAACTAATTGCATTTATCCACATGTAGAATGTTAAACCAGAGGCTATCCACGCTGGGGACGTGTATAGTTAAGATCAGTCAGAAACTCAGGAAACTGGGGACATACTAGCAGTTTCACTGTGGGTATAAGGAGTGGCCATGGAAACGTACATGGTGAGATGCAGGCTCCTCGAGAAAGGAGCATGGAGTATTAAGTATGGAGTCTCACGTTTCTGGTGAGGATATGCCCGTTCCTCATAAACATTGTCAGAGTGTAAGAAGAGTGGGCCCAGTGTCAGCCCGTTGCTTGGTTTCTATACTATTTTCCATCTCAGTATGTTTACTGTACCTTAGGACTAAAGGATTTGAGCCTAGGGACAAGAATTCTTTAGGCTTTCACAGCTGTCTTCCAACTAGAATGTGCTCATTGGGTTCCAAAGGACCTGAGAAACCCAGAGTCTCCTTAACCTTCTTTCTGCCCTAGTCTAACACTCTAAAGACACCCATGTCTTTTTGTTTTCCATCAGTGAGTGCAGAAATACTGAAGTTTCTGAAGGAATAGTATTACCACACTGGCTGACACCCTCATAAGCCTAAGTTTTACTGTCATAAACGTTCTGCATACTGATAGTTTTATATCAGTTTAAAAATTTTAAAATATTATTTCTATATCTTGTTTGTTCTGTTGTTGCTCTTTGAGCATTTTGATTTCTCTCTGAGCTTGTGTCAGGAGTTGAAGCCACAGGTGAGCACGGCTGAGAGTACCCTTTTTTGTAAGATGAGGGGTGATTTCCATCCCCATTCTTACAAAGTGACAATTGAGGACAAAAAAAAAAAAATCCTAATATATATGGCAGCAATCAGGCAAATAGTGCTATGTATTGGAAAATCTAAGACATCTTCAATAATCTCAATTCTTAGGATTTTAGAAATAGCGAAGTATTAGGCATAAAATGCAAAAGCGTGGTTTTAGTAATGATCCTTACAATAAAATAGTAGTCAAATAAACAGGTTCAGCAAACAGGGATAATTATAGAAAATACAAACTTAAAGAACAGGACCAAGAAGCTCAGTAAGTAAAGCGTTCATTAGAAAGCAGCATTCACTGGAGTAGACTGTAGGAAAAAAAATATGAGGAATGAAGATAAGGTTGAGAAATTATTTTAGTGAGAGAACCATATAGGAAAATGAAGAAGAGTCATGACTGCAACATTTAATCCCTGGAGCTATGGTAAAGAGGAAATACAAAATAGACTAAAGACACAGAAAGTATACTCCATGGCCTACAGCTTAAAATAGCATAAATCCATGGAAAGAACAAAAAAGCAAAACCAGAAAACATACACCGAGGGACTCAGCCATTCAGAAGCGGGTCACGGTTGTAGTTAAAATGCAGAGTACAGAATAGAGAAAGATAGCTTGCAGCATAAGAGGCAAGGACTTAGGTACTAGGATAGCAAGTCCCTTTAGTCTTGTGATCTTTTAACCGAGTCCCTGATACCAGAAAGCATGGACTCCTAAATTTTCAAGCTCTGAAACAAATTAATTGCCAACTAAGTTACCTCTTTCCAGCAGTGTTACCCTGTAAACTGTAAGATAAGTGAAGAACTACAGATCTTTCTTCATGAATATAAAACACATCGCACTGAATATTAAGAGGAATACCATGAATACTTCAAGAAACATTGCACAGGAACCAAAAAGGCGAATGTAATCATAGTTTGAGTGATGGCTCAAGGGTTAAGTGCACTGACTGCTCTTTCAGAGGGCCCGGGTTCAATTCCTAGCAATTGATGCCTTCTTCTAGCCTCTGCAGATACTGCATGCCTATGGTACATAGACAAAGCACCTGTGATGGTTTGTATATATTTGGCCAAGGGGAATGGCACTATCAGGAGGTGTGGCCTTGTTGGAGGAAGTGTGTCATTGTGGGCATGGGCTTTAATACCTGCTAGTTGCCTGGAAGCCAATATTCTGCTAGCAGCCTTCAGATGAAAATGTAGAACTCCCAGCTCCTCCTTCACCATGCCTGCCTGGATGCTGCCATGGTCCCATCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGTTGTCCTTATTAGAGTTGCCTTGGTCATGGTATCTTTTCACAGACAGCAGTGAAACCCTAACTAGGACAGCACCCAAACACATAAAATAAAAGTAAATCAAATCTCAGAAAAAAATCAAAACAATGGGTGCAGTCAAGAGCCTTGGAAAGAATTATACTTCACTAATAAAAACATCAGAGTGAAGGAAAGTGCTAGACATTATTAACTCAGTAAACTAGCAGACCTCTAAGATGGAGAAATAAAAATTTAATAATTGTTCTTTAATAAGACTAATTGTAACTGAGTTTTCCAACTCATAGCTGAACACTGACAGCCTGGATTTAAAGAAAAACACTTCCAGCTCCTGCTAAAATGTGAGCTTATAATACCGGTGAAGACGGACTCAGAAAAAGGAAAAATGCTTTGGAGCAAACAGAGTATGAACTCAACAGTAGCCATACTTACATTAGTCAAACCATAGTGTATGCCAGAGTAAACCAGAAGTTTCTTACACATGAAATATTGGACTAGTGCATTATGATGACCACTAATAAAAGAGAATCTACCCAAATTAATAAGATTGGTGAAATGGACTATTTCAACAGACATTTTTTGAGATAAGAAAGATTTGTTGGGAATATTTTTAGAGTGTGTATTTTGGGGTTAGAGAATAGAAAACTTGAATAGATATTTATTTGTGTATATGTATGACCTATCAAAATTCTACAAAATGCCTATACTACATTAATCAGTAAGAAGCGCTGCCATTGAGGCAACAATAGGGTGCCACAACTAATCAAAGCCCCTTGTAAAATCTCTTTGACTAGTTCATCTACCAGTCAGGTGTAAAAGTGTCTCTGCTCATCAGACTCATTCATAAAATGGAAAAGGAATATGGGAGTTTTCAAAACTTGCTATATAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAACCAAAAAAAAACTTGCTATATAACCAGTAGTAGAAAGATAGCAGAAGTAGGCAGGAATATGAGAACAAAATATACATGTAAAAGTCTTCAGTAAAATACCAGAATTCTTTAAGACAATTGCAGAGATGCCAGGTAGTTTAATTTATGGGAAACATTATATGTGGCGTGCATGTAATTAGCGTTTGGAACATACACGCTTATTTCATTTGACTATCTGATAGAATTTGGCATCTCTTCAAAGTTAAAACTTTTTCAAGTGGCCAATGAAAGGAAGATGCCAGCATAATATCACAGTCTAGACAACTGTATGCTGAATGTAGAAAAGAAGAAAACATTTCGTCTAAATAACAACACAAATCGTAGTCTCCTTTCCCTCTCGTTTGCATTGTTTTGAGAATTTCATATTTGCACAAACGATGTGAGCTTCCTTTCCTTTCCTTCCATCCAACCCCTTTCATATCCTACTATCACATCTCCCTCCCACATTCATGCGCTCTACTTTTTTTTTTTTTTTTTTAAAGATTTATTTATTATATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCGGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAGCAGTCGGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTGCGCTCTACTTTTTAACCCACTGAATCCACTTTGAGCTACCAGTGTGTGTGAGGGCATAGGGCTGTTCATGGAGCTTGGGTACCCTCTTGGGGGCCACATCCCTGTAGAAACCTCAACTCTCCATCACCTAGTAGCTGACAGTTACCAGTTGCTTCTTAGTTATTAATGGGACTTTATCAGTCCCTTCTTCATGTATGTTGGGATTTTGGTTAGCTTTATCCTGCAAAGGCTTTACACATATAGTCCTAGCTATTGTGAATTCATGTGCATGGTGGCATTGTCTTTTGCATGGTGGCAAAATCATCTACCACTTCTGTCCCTACAGTCTTTTGATGATCCCTGACCTTTGGGAGGAAAGTGTGCCAAAGATATCTCATTTAGGATTGGGCACTCTGACAAGCTGCATGTGTGTATAAAGATAAGTACTTAGGGGGCTAATTTAATACTATAGCTATGTAGAAAAAAGCTTGAGGTAGCTTGTGTCTGACAGTCTGTGACGTATCCACCCACAGGTTCTCGACCCAGTTACAAAGCAAGAGTTCTATCTCATGGAGTGAGCCTTAACTCCATGAGTGGTTGGTTATCCCTATATATTTCATGCCACTATTGTGAAACTAGGTATATCTTGTTGGGCCAGTTATTATTGTAGCTTTCAGGGTTCACAGCTGGCGAAGAATGTTGATAACTTTCTTCTTTTAGTATTGTGATCGCGCTTCCCAGCACTACAAGAGCAAGCCAGTAGGCATGAAGCTTCCAGATCAGTGTCAGGTTGATTTTCCATGTTCTTTCTATAACTGCAGTTTAAAGTTTCTTAAGAAATGGGGTCTTACCATCAAGTTCTGGAGGGTAACTAAGAACAATAGCAATATTGTTGAATGTTGGTGCAGCGGTGGTCTTGGGGAATTACACTGTCAATACCTTGAAAATAGATTACCCCAGAGCACTAAACATTTTGTTCAATAGTCAATGGCATCTGGGGCATTGTATTTCTCCCCCGATAATGTGTCTCCATTCTATCTATCTCTATATCTGTCTGTCTGTCTATCGATCATCTTTCTTTTCCTTCCTTCCCTCCCTCCCTCCCTCCCTGCCTCTTCGCTTCACTTTCCTCTCCTTCTGTTACTGTACTTTTCTTGTACTGTTAGTAATGTTGTACTCTTGTCTGATTTCAATCCTTTCTCTATGATTCTCTAAAGGGTTTTTTAAGCTTGAGTTCAGGCATAGTACATAGATGACTAGTGCTACACTGCGTACAGATACTGCCTCTCTTGTACACATGTCACTCCGCAGCGCTCTCCCCGCGCCTACCCTCATGTCACACTCAAACTCTCCGCACCTATCTTGGACTTTCTTATACTGACCTTTTCGTCGTCTCGTTTCGGCGCTGATTCTGTAGCTTGCCCTCGCACTCCGCTGCTACCATACCTTACTGGCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTAACCTTTCTTTTAGAACATTCCAAAGTAGGTTCCATGAGGCTTTTAAAGAAAGGCTTTTTAGTGTTAGTTATCCCGCCCTATGTACCTCCTCTCTGCCCTCTCACCCCACCTCTCTGAACCCTACCTGCACCATTATTCCCCTTTACTCCTTTATAACATTTGTGTTATATCCCCCATTCTTTATCTCTCCTCTTTTTTTCCCCCCTGACTTCTATAGGTCCTCCTATTTAAGCACACACATCTAAAGACTCAAAGCTAGGATCCACATATGAGAGAGACCTTAGGTCATTTTTCAGGATCCCGATTATCTTTCATTGAATAATCTATTTCTAGCTTATTTATTTACCTGTAAAGTTCATAATTTAACTTTTATTTATAATGTAAAAATTTTATGTATAAATAAATATATATCATATTTTACTTATTTATTTATTAGATAATGGACATCTATGCTCATTTCAGTTTTCTAGCTTTGAACAGTAATGCATGTGTGTGTTAATCATTATTGACTGCAATTAGAAGCCTTTTAGATCAAGTTTGAGAGCAGTGTAAACCGTAGATAGAAACATAGCTGTTTGGAAGACAGCTTGATAGTATGAACATTCAAAAGACAAAGTAGGTTCTTCCTTAAGGACTCTGACTTCTCAAGCTGTGAGTTGGATAAATTATGTCCAAAATTTTGTACAATTAGTATGTACTTAAAGACACCTAGAAAAGTGTACTTGACATTTTTTATGTACAGGCACATACCAGTCCAGAATTGCAACATTATCGTTTCTTAGCATTTATTTTTAATAAAATGGTTTATTTTCACAAATGTATCTTTGTCCAAGAGGCAAAGAGATATGTTGAACAAAAGATGGATTACACGGAGCTTCTGATCACACTGTCCTCTAGTGTGAGATAAGGGTATGTAATGACCAATGGAAGACAGACAGACCCTGCTGTGGCTTTTCAGGGCAAAGGAATCAAATTTATAATAAATATATAATAATTCTTTAATGAACCTACATTCTTGCTCATAAAACAGAATATGAAGCCTGCGTCGTGTGGGTAGCTAGTGAAAGAAAATCTCCCCACCTCACATGGGAGAGGTGTGATATCAGATACAGTGTGTACAATTAAGGTGATAGAGGACTGGAGTTCAGGTTAACAACAGAGTACAAACAAGTGTGCCAGAAACAGTAGCTAAAAGTAGGTCAGTAACTTCTTTCTATTTATTTCTCAAGAATAAAAGCAGTGAAGGAACACGACTTAGGACTGCTTTGCCTGTTTGTGTAAAATTTCCCTCAGTAAGTTGAAGAATCATGAAGAAACTTCACAATTGTATTTGAACTGAATAAATAATATATTTGATTTATGGATAGTAATGGGTTTTTAATATCGTTTCAG
Seq C2 exon
GTGTTCTTGAAGTGTATACTCCAGATGAGAGTTGCCTGGAAAATCCAGAGAGTCATATGTGGCCAGTGGGAAGCATCAGCAGAAATCTTTCAAATAAAGAGATGATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001323:ENSRNOT00000030757:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]