RnoINT0168230 @ rn6
Intron Retention
Gene
ENSRNOG00000025554 | Zfp445
Description
zinc finger protein 445 [Source:RGD Symbol;Acc:1559144]
Coordinates
chr8:131890854-131892203:-
Coord C1 exon
chr8:131892077-131892203
Coord A exon
chr8:131890965-131892076
Coord C2 exon
chr8:131890854-131890964
Length
1112 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
ATCCCATTTCTTTTCTGCAGTGG
3' ss Score
8.52
Exon sequences
Seq C1 exon
GAAACTTTGACTTTCCAGGATGTGGAGGTGACCTTCTCTCAAGAAGAATGGGGATGTTTGAACTCAGCTCAGCGCAATCTTTATAGGGATGTTATCCTGGAGAATTATGGGAATGTAGTTTCTGTGG
Seq A exon
GTAAGTCTTTAGTATCCCTAGTTACCTTCACTTTTGTTTTTTCCTTTTTTTTTTTTTTTTTTGTTTTTTTGTTTTTTTCTTTTTTTAATCTTAAAAAAAAATCCTCATTTATGTGCATGGCCATGTATGCATGTAGGTGCTCGCATGCGGTGGTTCATACAGTCAGGATAGCTCACACAGTCAGGGATAGCTAGCGAGAAGAGTTTCCTCCTGTGAGCCAAACTCTAGTTAGGATTGGTGGCAGGGGCCTTTCCCTCCTGAGCCGTCTTCACTGGCCCTTGTTTTTTATTACAATGTATTAGAAAGGGCCCTTGTTGTAGATTTTGGTTCTGTAGCCACCAAGCTTATTACTTAATCAGTGACTAAACTGTCCTTGAGTAATGGAGATGGTGATGTCTGCCATGTGAGGTCATGGGAAGACTGAGTTCCTAGTCAAACTCTGATGACGGAGCCAGTTGAGTAGTTGTGTGCTTCTCGCCTCTGGGGAATATTATCGTTGTTGTTAGATATTTTAGGGTATTTTGATTGCATGTGTGTCTGTGCACCACTTGCATATATTGCTCATGGAAGTCAGAAGAGGGCTTCAGATCCCTTGGAACTTGAGTTACAGATGATTGTTAGCCACCATGTGGATGTGGGGAATTGAGCCACATCCTTTGGAGGAGCAGCCAGTGCTCTATACCTGATAAGGTATCTTTCCAGTTCCACTCTGGAGGATTCTTCAAGCCCCTTTTCCTGTAAGTTTTCTCATCCTCTCATCTGTGCTTAGGGCATCAGTTCTCAACATGTGTGTTTCAACCCCTTTGGCAAATGTGTTTCTCTAAAAATATTTACATTATTCATAACAGGAACAAAATTACAGTTATGAAGTAGTAGTGAAAATACTTTTATGGCTGAGGTCAGCACAACATGAGGAACCGTTGTAAAGGGTTTCAGCATTAGGAAGGTTGAGAATCACTGTCTTAGGGCTGTCACAAATGGCTGGCCAGGCATTCTTTCCTAGCTTCTTGCATTTGTCTTTTTGGCCTTTTTTCCTCTCTGCCAGGACTGTAGGTCCTAGAAGGTGGTTCTGTGTGACCTGTCTTATCTCACATCCCATTTCTTTTCTGCAG
Seq C2 exon
TGGGCTCTTCTCCCAAACCTGCTCTGATCTCCTGGCTGGAAGCAAGGAAGCCGTGGGGCATGAATATCTGCACAGTTCAGCTTAAGAGGGAACCTGATGCTGCCCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025554:ENSRNOT00000034690:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.132
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTTTGACTTTCCAGGATGTG
R:
CTTCAGGGGCAGCATCAGGTT
Band lengths:
238-1350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]