BtaINT0165506 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046301 | ZNF445
Description
zinc finger protein 445 [Source:HGNC Symbol;Acc:HGNC:21018]
Coordinates
chr22:16371081-16373032:-
Coord C1 exon
chr22:16372906-16373032
Coord A exon
chr22:16371192-16372905
Coord C2 exon
chr22:16371081-16371191
Length
1714 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CCTTCTTTTCTCTTCTGCAGTGG
3' ss Score
10.93
Exon sequences
Seq C1 exon
GGGACTATGACTTTCAAGGATGTGGAGGTGACCTTCTCCCAGGATGAGTGGGGATTGCTGGACGCTTCTCAGAGGAACCTGTACAGGGATGTGATGCTAGAGAATTATGGAAACATGGCTTCTGTGG
Seq A exon
GTAAGGTGTCACTGTCACCATCTTCCGCCTGCCTCTAGTTCTGCCTCCATAGTTCTCATTGTGGTGCCAGGAAGGGGTCCTGACCTGAGTCTGGGTCCTGTCTGTGTCACTACTAACCAAATCACTTAATCCATTACTTCAGTCTTCCTCCTTAAAAATGGGGATATATTGCCTGTCCTGCTGAGATACTGTAAAAAATTAAAAGTCGTATGTGTCAAGTTCCTGGTTTATTCAGGCCTCAAAAAAAAGTTAGCTGATTTATCTGATTGAGTTGTCACTTGTTGTCACTTGGTTCTGGAGAATCCTAGCAGTCCTTTTGTCTGTGCCTTATCTCATCTCAAGCTGGTTTTGGAAAAGGCAGAGGAACCAGAGATCAAATTGCCAACATCTGCTGGATCATTGAAAAAGCAAGAGAGTTCCAGAAAAACATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTTGACCATGTGGATCACAATAAACTGTGGAAAATTCTGAAAGAGATGGGAATACCAGACCACCTGACTTGCCTCTTGAGAAACCTGTATGCAGGTCAGGAAGCAACAGTTAGAACTGGACATGGAACAACAGATTGGTTCCAAATAGGAAAAGGAGTACATCAAGGCTGTATATTATCACCCTGCTTATTTAACTTCTATGCAGAGTACATCATGAGAAACGCTGGGCTGGAAGAAGCACAAGCTGGAATCAAGATTGCCGGGAGAAATACCAATAACCTCAGATATGCAGATGACACCACCCTTATGGCAGAAAGTGAAGAACTAAAGAGCCTCTTGATGAAAGTGAAAGAAGAGAGTGAAAAAGTTGGCTTAAAGCTCAGCATTCAGAAAACTAACATTATTGCATCCGGTCCCATCACTTCATGGCAAATAGATGGGGAAACAGTGGAATCAGTGGCTGAGTTTTGTTTTTTGGGGGTCCAAAATCACTGTAGATGGTGATTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGATAGCGTATTAAAAAGCAGAGACATTTCTTTGTTGACAAAGGTCCGTCTAGTCAAGGGTATTGTTTTTCCAGTAGTCACGTGTGGATGTGAGAGTTGGACTATAAAGAAAGCTGAGCGCCGAAGAATTGATGACTTTCAACTGTGGTGTTGCAGAAGCCTCTTGAGAGTCCCTTGGACTGCAAGGAGGTCCAACCAGTCCATCCTAAAGGAGATCAATCCTGGGTGTTCATTGGAAGGACTGATGTTGAAGCTGAAACTCCAATACTTTGGCCACCTGACGTGAAGAGCTGACTCATTTGAAATGACCCTGATGCTTGGAAAGATTGAGGGCAGGAGGAGAAGGGGATGACAGAGGATGAGATGGTTGGATGGCATCACCAACTCAGTGGACATGAGTTTGGATAAACTCCGGGAATTGGTGATGGACAGGGAGGCCTGGCGTGCTGCGGTTCATGGGTTCGCAAAGGGTCAGACATGACTGAGTGACTGAACTGAACTGAACTATCTTGTCTCTGCTCAGAACTGTCAGAAAGAAATCCCTGTCTGGGCATCCTGCCCTGACTTTCTCCACTGGCCTCCTGGGCTTCCCCTCCTCCCTATCAGGAGCTCAGTCCTGAGAGGGTCCTGGAGAGTAGTTCTGCCTGGTTCATCTACTGTCCAGTCACATCCCCTTCTTTTCTCTTCTGCAG
Seq C2 exon
TGGGGCCATTCACCAAACCTGCTCTCATCTCCTGGCTGGAGGCAAGGGAGCCATGGGGCCTGAATGTCCAGGGAGTTCAGTTTAAGGGGAATCCAGGTGCTGCCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046301:ENSBTAT00000065626:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.421
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTATGACTTTCAAGGATGTGG
R:
GCAGCACCTGGATTCCCCTTA
Band lengths:
230-1944
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]