RnoINT0168639 @ rn6
Intron Retention
Gene
ENSRNOG00000047061 | Zfp773-ps1
Description
zinc finger protein 773, pseudogene 1 [Source:RGD Symbol;Acc:1563793]
Coordinates
chr1:69841998-69843149:+
Coord C1 exon
chr1:69841998-69842063
Coord A exon
chr1:69842064-69843022
Coord C2 exon
chr1:69843023-69843149
Length
959 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
AGCATTCTCTGTTGTGGCAGGGT
3' ss Score
5.12
Exon sequences
Seq C1 exon
GTGTCCATGGACCCAACTGCCCAGCAGACTCAGACTGCAGTAGCTGGGCAGGGTGCCCAGGCACAG
Seq A exon
GTGCGTACCACGTGATCACACCCCACACACCCCCAATTCCCCAGTCCTAGAGTGCAATGTGGGCTGGGATGCTAGTTGGAGCTTGCAGATGGCTTAGAGTACTCATACACGCACATTAATGAGCCTGGGAGCCCTGTGACTGTAAGACTTGTTCAGGGATATGGGAGGCTTTGTGTTAATAGCAGTCTTTATTCACAAATGAACGGTGCCGCAGGAACTCACATTTTTCAATTGCCTTATAAGTGATGTCTGGGATTACAATGCTTTGGGACTCTGCTTGATATTATGCTCCTGTCTTACCATCTGATTTCCATAAAAGATAATTATAGTATATAAGGTCTCTGAGTCCAGAGCGGGAATTATATGGACAGTTCCATTAATAGGAAGCGACTTCCTTAAGATTCAGAGGTATTCAAGTTCTAGTGGCGACTATTAAAGTGAGATGGATTAGGAATGCTCAAAGAAGCCCTCGGGTATACTTGAGATCTGCTGGGTGCGGTGGGAGACAGCAGTTGGGAGGGGTTCAGTAGATGAGAGTATTCAAGTTGCAGGCTTGAATACTAAAGCGAAAATGGAATGACATTATGGTGGCAGAAAGTATGACTAGATGTGTTCATGTCCAAGCTCGTGCGCCAGAGGTATAGTGGAGAGCAGTGGCTCCAATCTGGGCATATCTGTTTGGCATGATGTGAAGAAGCCTATATAAATTGTCTGGTAGAAAGGTAGAACTTTCCATACCAAACATTAAGACTAGGTAAATTTCATCTGTCTGTCTACCTGTTTGTGGCTGGTGCTGAATACAGTGATCATTGCAACCTTGAGTAGAGACAGAGTGTCAATGGGTGAAGAGTCTGGTGCCCTCTGAAGAAGGGATCTAAATGGGAGTGGTTCTCTCGGATGTCAAAAGTCCAAGAGAAGGAAACTGTTTCTTATTAACTCAGCATTCTCTGTTGTGGCAG
Seq C2 exon
GGTGGTGTGGCCTTTCATGATGTGGCTATCTACTTCTTGAGGGAGGAATGGAGACTACTTGATGACTCTCAGAGGCGTCTGTACCACCACGTGATGATGGAGGTCTTTGTTCTCATGTCCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047061:ENSRNOT00000072231:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCATGGACCCAACTGC
R:
TGATGAGGACATGAGAACAAAGACC
Band lengths:
192-1151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]