MmuINT0005326 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:7070497-7072121:-
Coord C1 exon
chr7:7072083-7072121
Coord A exon
chr7:7070624-7072082
Coord C2 exon
chr7:7070497-7070623
Length
1459 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TCAACTTTCCCCATGTGCAGGGC
3' ss Score
8.56
Exon sequences
Seq C1 exon
GTTTCCCAGTATTCAGTGAAACCTGCCAACCAGGAAGAG
Seq A exon
GTAAGTGGAGGGTGCCCAGGAATCACACTCCTGACTTAACACATAAGGGACCTCAGGGACGGTGGTGTCCTGGGACTCTGTGCTGGAATTGTCTCTGTCCTTTTGTGATAGTTTGTTTATGCTTGGCCCAGAGAGTGGCACTAATAGGAGGTGTGGCCTTGTTGGAATAGGTGTGTCACTGTGGGCATGGGCTTAAGACCCTCACCCTAGCTTCCTGGAAGCCAGTATTCTGTTAGCATCCTTCAGATGACGATGTAGAACTCTCAGCTCCTCCTGCACCATGCCTGCCTGGATGTTGCCATGCTCCTGCCCTGTGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCTCAAATGTTGTCCTTTATAAGGGTTGCCTTAGTCATGGTGTCTTTTCACAGCAGTAAAACCCTGACTAAGACACCTTCCATTGGATTTCCCTGGCACATGCTCAGAATGAAAGGTCCCCACGTCCACAGCAGGGATTACATGGCTAGGTTTCCCTTTATGGTAACCATTGGCTGAAGATTCAAAGGTCTTAAAGCTCCAGTGATGACATTAGACCAGGCCTGGAAGTGAGATGGGTTGGGGATGATTAGAAATGCTCAGGCATGCATGAGATCAGCTGGTTTTAGTGGAAGGTAGGAATTGTGGTAGCACAGCAGCTGAGGGCTAAGTCTGCATACTGAGATGAAAATGGAGGCTCAGTGTGAAGACTGATGTGTGTGCCCTGCGGTCATGTACAGATGGCTTCCTGGCCTTTGTGCCAGGGACAGAGTGGACAACAGTGACCCAAATGTGGTCTGTGTGAGACAGATGATTGGGAGGAGCCCAGATGAATTCCCTGATAGCCTGATAGAAAGGAGGGACTTTCCTTGGCAGCCTTCTAGCTTGGATTGATTCCAGCTGTGGTGGTTTCAACGGAGATGTCCCACATTGGCTCATAGACTTGAATACTTGGTCCTCATTGGTTAAAAGTCTGGGGAGAATTATGAGATATGGCCTTGTTGAAGGAGATGGAGGTGGGCTTGTATGTTTTTAAAGCTCTTGTCATTTCCAGTTAACTCTCTTAGCTTGCTACCTATGGATCATGATGTATTTAATTTCTCAGCTAGTGCTCCAGTGCCATGTATGCCTGTAGCCATGCTCCCTGCCATGAAAGTTACAGACCCAACCTCTGAAGCCCCAATAAACTTGTTGTTGTTCTATAAATTGCCTTGGTCATAGTGTCTCTTCACAGTAATAGAAAAGTAACCGAGCCAGCATGTCCACTTGGCTGTTGTTGCTGAGTGCCCAGTACAGTGATTAGTGGGACCTGGAGGACAGCTGTGTGTCAATAGGTTCACAGCCTGGTACCCTCTGAGATAGGAGCCTAAGTAGAAATGACTGTCTTGAGGATATGAAGATTCCCTGACGAGGGAGCTTCATATAAACAAATTCAACTTTCCCCATGTGCAG
Seq C2 exon
GGCTGCGTGTCCTTTGAGGATGTGGCTGTGTACTTCTCCTGGGAGGAATGGACACTGCTCGATGACTCTCAAAGGCTCCTGTACCAGACTGTGATGACGGAGATCTTCACACTGGTGTCTTCACTGA
VastDB Features
Vast-tools module Information
Secondary ID
-5730403M16Rik:NM_172738:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: