RnoINT0168706 @ rn6
Intron Retention
Gene
ENSRNOG00000046652 | Zfp84
Description
zinc finger protein 84 [Source:RGD Symbol;Acc:1309815]
Coordinates
chr1:88326676-88336407:+
Coord C1 exon
chr1:88326676-88326771
Coord A exon
chr1:88326772-88330572
Coord C2 exon
chr1:88330573-88336407
Length
3801 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CACTTCTTACTGTCTTACAGATT
3' ss Score
10.13
Exon sequences
Seq C1 exon
GTCTTGCCAATATGAAGCCACGTGTGGTCTCCCTTCTAGAGCAGGGGAAGGAGCCCTGGATGGTTATGAGGAATGGGACAAAAGTGTGGTGTGCTG
Seq A exon
GTGAGTGATGGGCTGTGGGGCTGGGGGCAGGGCAGATGTCACCCAGGCACTCTGGGAAAACTCCCTGCAGGCAAGGCCTGACTGAGGCCGGGGGAAGGGTGTCCTAGCACAAGGCCAGGAACTCTTACTCCCCACTCTCACACTGGTATTCCTCACACTTCCTGCCATTCCCCCAGAAAGAACCCATGACGAGCATTTTACCTGTATTTTGAATCTAATTTTCTTGGCTTTTTAATTTTTGAGACAAGGTCTCGCTGTGCATCCCTGGCTGCCCTAGAACTTGCTCTGTAGACCAGGCTGACCTCCAATTCACAGTGATCTGCCTTCCTCTGCCTCCTGAGTGCTGGGACCAAAGTCGTGCGCTCTGTCCAGCTCTCGTGGCTTTTATTTTTTTGAGATTTATTTATTTAATGTATATGAGTGCACTATCACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTTTGAGTCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCATTACCATCTAAGCCATCCTGAACCCATCTCCAGCCACCTCCAGCCCTCCCTTGGCTTTTTTAAACACCTTCATTGAGATATGCCTCACGGATCATAAAACTCATCCGTGTAAAGTACGTGGCGGGATAGCTTTAGTATTTGTTGACTTGGCGTATCCATCGCAGCCATTCTTGGTAGAGCCTGTGCCTGCCCTGATGCAGCATTTCCCATTAGTGATGTCAGGCAGGACATTGCTCACTTTCACGATGATACAGTGGCATGATGCTATCCCTTTTGTCACTTAGGATCATTGTCATTAAAAGGTTTTAGAATTCTTGTGTAAAAGCACACATCCAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGTGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAGCACACATCCAAAGAGAACTATGGGTAATACTGAACTAGCTGGGAAAGTCTCCTTTTTCTGACTTTTGAGAACTTTTTCTTTTTTAAGAATTTGTGTTAAAGGCTGAGAGATAGCTCCAGCCAGTAGAGCACACTCCTCACAAGCATGAGAAGCTGAGTTCAGTCCAGAGCTCACATCTATGCCAGGCGTAGTCCTGGTCTCAGGAGACAGACAGGAGGCCTCCCTCGGCTCACTAGTCAGCCAGCCCAGGGTAACGGATGAGCTGCCTTCTGTATGCACAGGTATAGCCCCCCACACACACACATGCACGCACGCATGCATGCACACAGGCATGAACACACGCACAGAAAAAGAATTTATGCTAAATGTCTTCAGTGGTAGATTTCAACAATGAAACCTTTTAGGTTTAAGCTTTTCATAGGCAAATGACGAATGAGGACACAAGGGCTCTATGTGTGGGTGAGGAGGTTTGTGTTGTGGATATTCAGGATAGCACAGCCAGAGAGAAGCAGCTGGAAGAGACCACGCTGAACCCCAGGCCATGAAAGGAGGGAGCCAGGGAGAAGAAGGGGGAGGGGAGCGTAGGAAGAGGCCATGAGACCGAGGGCAGAAATGGCTAGACTGAATAGAAGAGGAGAAGCTGGGCAGGACAGCAAGCCTCGCTTGGAGAGGACTAGAGGAGAGGACATGAGTAGGGGACATGCCAGCCAAGATGGCTCCGTCACAGGTGCGTGCAGAACTCAGCCATACTGGGAGAACCTGGCTGCCAGCGTCTGTTTGATGTGTCAGTCACTTCAGTTAACCATTTGTCTGACTTTCTCTGGACCTAACAGCGGGAAAACCTTTTACATTTGTTGTTATTTATGTGCACTAGGCTTGGACTGAGCGCTCTACAGCCTTGTCTTAGTGCAGACTGAACAATGAACAAGGGAAGGCCCATGCAGTCAGATTGACTGCATGTTCTAGTGGGAGGAAAATGATTGCATATGTGCTCTTTAAGAGGCAATAAAATATTGAAGTTGTTGTGTTTTAAGTCAGAGAGTCATAAGCTCTATTATATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTGGGATGGTTGTCTAAGGAAGGACATGGGTGGGGCAAAGCGGACCAAAGGAGAGAGGGAGTCTGAAGGAGGTAAGAGCAGTGTGTGGAGGATGTGAGCTTAATGAGTATCGGCAAGAAGCTAATGGAGGGTCTAGGACCATCAGGTGCTACAGGCACAGGTCACTGATGCCTCTGTCCCGCAGCAGTTTGTAGCAGAGCTGCAGAGCCCAGCTTTACCCCAGCACTTATGCCATGAGGATGGATGGTGTATGGGTTTGCCACTCGGTTGCCGTTCAAGCACAGGTGTGGTCAGGCTGAATTGCAAGGCTGTCTGGGAAATGTAGTGTTTGTCTATATCACTGTTGCCAAGCTGTAAATCTCGTATCATTCTAAGAGGAGAAAGCGGAAATGTTACAAGACTCAGCCCTGGGCATGGAGCCAGAGAGCCAGGCAGGGGGGGTAGATTGCTCAGAGGAAAATCTGAGGGGTTCACAGAGCCCTGAGAGCAGCCTTAGCTTAAGAAGGAAGGGACAGAGAACTGGATGCATGTGATGTGAAACAAGGACTAACACAGGAGGTCAGGTGGGGAAGGAGGGGATGGACAGACCATAGTAGCACACCTGTGAGGAAATGCCATGACAAACTCTTTACTTTGAACACTGGCATTAGATAAAAGATGTGGTATTGCTGGCTCACAACTTCAGTCCCCGCACTCAGGAGGCAGAGGCAGGTGGATCTCTTGAGTTCAGAGCTAGCCTGATCTACAGAGTGAGTTCCAGAACAGCCAGGGCTACACAGAGAAACCCTATCTGGTGGGCATGGGGGCAACTGGTAGCTAAGAGAGGAGCTGAGAGGATTAACTATTGGAATTTGGCTACATCAAAGTTACGTAAGGCAATAAAAGCCAGTTACAGTGGGGTGGCAATAAAAAAGTGTATTGGAGAGATTTTTTTTTTAAGAGGAGAAACCACGAAAAATGGGACAGCATGTGAAGCGCCCACCTCGACCAGCAAGGAAGACGCAACACCGTTGGATTCTTCTCAACAGCCTTTATTGCAGGAACACCTCATTCTTGATACGGGGGACCCCAGAGAACAAAGGCACTCGCCTTAAGTACAAAACAGACAGTGGCTGTAAACTTGTCCTCTGGGGATTGATGGAGTGTGAGATACCTTATTAACATGCTTATCACTCTGGCCTTGTAAATGCCAGAAGAAGGCCAGGGACACGGCTATAATGGTTGTAATACCATAAACAACCACTAGATGTCAGTGCCATCTTTAGCCGCTTCCAACAAGCATGAAAGTTACCTAGTGTCATGCCGAATGCAGAGGAAGGCAAATGGAGCACAGTGCACAGAACAGTCTGGGTGATGGGATTAAGTTTGCTTTTCCTGTATACGTTTGAAATGGTTCATAGTACTGGAAAATATGAGATGATGTGTAATAAATGTGCTCTATAACAACAGCAGGTAGTGACGAGCTCCCTAGTCTGTGAAGGGTCATGTGTAGCTGGGATTAGGGGCCAGAGCAGAGTAACCCCGTGAGCCATATTGAGATCTTAGGGAAGGTATCTGCCAGAATATTCTAAAGGAATGCCAGACTTCACAGTCCCCTAAAGGGGCTGTCATCACGATCTCTCAGCTCCCTCCTCCTAATTCCAATGATGGGTTACAAGTTGTTTAAATTATCATTGTATTATTTGTGTGAAAATAACCTTCCACTTCTTACTGTCTTACAG
Seq C2 exon
ATTGGGAGTCTAAGACAGAAACCAAGAACTTCCTTCCAAAGGACAGTTCCAAAATTAAAACATCACAACAAAAGATGGCAAAAAACTGTACACGCTCCAGCCTTGAGGACAGCAGGGCCAGAGGTAACAGAGAGGTCACATGCGAGTTGGAGAGTCAGCAGGTCCATGAGGAGCGACACTTGAGACAAGCTGTGGTACCCTCTGTCGAGAGGCCTGGTTCCATCCAGTGCACAGCCCATAGGGAGGCTCACCCTGGAGGAAAACCCTGCAGGTGTGAGAAATGTCAGAAAATGCTCGTGCGCAAGGCACCTCCCAGTGAACGTGAGCAAAGTCACAGTAAGGAAAAGGGCAGTGAGTACACACAAAGTGGGAAGGTCTTTAACTGCACGTCAGACATGGCAGTGCACCAAAGACCTCAAGAAAGCCGAAAAGGCAGTGAGAGTAAGAAAAACGCCATCCCTTGTGGTTCTGACACCCCGAAACCTCCAGGTGCTCAGGGCAGTGAGAGGCCGCACAAGTGTAAGGAGTGTGGGAAGGCCTTCCAGACGCCCTCCCAGCTCAGTCACCATCAAAAGCTGCATGTAGGTGAGAAGCCCTTCAAGTGTAAGGAGTGTGGGAAGGCCTTCCCCTCGAACGCCCAGCTCAGTCTCCACCAGAGAGTTCACACTGACGAGAAGTGCTTTGAGTGCAAGGAGTGCGGGAAGGCCTTCATGCGCCCCTCGCACCTGGTCCGGCACCAGCGCATCCACACCGGGGAGAAGCCTCACAAGTGTAAGGAGTGTGGCAAGGCCTTCCGCTACGACACGCAGCTCAGCCTCCACCTGCTCACTCACGCTGGGGCCAGGCGCTTCGAGTGCAAGGACTGTGACAAGGTGTACAGCTGTGCCTCCCAGCTCGCCCTCCACCAGATGACACACACCGGAGAGAAGCCCCACAAGTGTAAGGAGTGCGGGAAGGGCTTCATCTCCGACTCACACCTTCTTCGCCATCAGAGTGTTCACACTGGTGAGAAGCCCTATAAGTGTAAGGAATGTGGCAAAGGCTTCCGTCGTGGTTCAGAGCTTGCCCGACATCAGAGAGCCCATTCTGGTGATAAACCCTACAAGTGCAAGGAATGCGGGAAGTCCTTTACTTGTACCACCGAGCTCCTTAGACACCAGAAAGTCCACACTGGTGATAGACCCCACAAGTGCAAGGAGTGCGGGAAGGCCTTCATTCGCAGGTCAGAGCTAACCCACCATGAAAGAAGCCACAGTGGTGAGAAACCCTACGAGTGTAAGGAGTGTGGGAAGACCTTCGGCCGTGGCTCAGAGCTCAGTCGACACCAGAAAATCCACACCGGGGAGAAGCCCTACAAGTGTAAGCAGTGTGGGAAAGCCTTCATTCGAGGATCTCACCTTACCCAGCATCAGAGGACTCACACGGGACAGAGGAGTGAGTGAGTTGCCTTCGGAAAATCCATACAGTTTAAAAACCCTGTGGTGGCTGACAAAGTTTCAGGGTTTCTCATCGGCACTAGAATTCATACTCAAACACCAGTTATGTCCAGAAGTGATTGGTCACATGTCACCAGAAAGAAACCTTATAATCACAGAAATCGGGACTTGCTTCAGAATTTATCATAAAGCTTTAGTTGATGAAAAACTGGAAAGTTCCACGAATGTACAGAGAGGAGGAATGCCTCTCCGTAGCTAGAGCCAAAGAAACAGGCCTGGGGATTGATATCTGTGACCTCAGGAGGGCAGTGGGCATGTCGGAGAGATTAGCGGTTGGATCCTTTCCGCTCCCGCCCTGGGCCAGCCCTCCGTGAGAGAACTCAGTATCCAAGTGCAATCCTCTGTCACACCTCAGGCCACACTAATGCTACCATGCAGTACACTTGCCGTTCACCCACTCTACGTTCATGGAATGGTTGCTAGTTTATACAGTTAATTTGAACTTTGGAGTGTGGGAAGGATTCGGCCATGTTGACTTTTTACATGTCTTCAGGGCAAATGATTTACTGACTACTCAGTTCTTCTGTAAAGTAGCAGTGTCAGCCCCGTGTTTCTAGTTATGCTCTAAGGGTGCGTACAGTTTGTGAAATAGCGTCCAGCTAGTGTCTAAAGAGTGCCACGAGCAGCAGGCATGCTGCTACACGCCTGTGATGATGCACCGGCCATGCTGTTACATGCCTGTGATAGTGTACGCACCTGGAAACCGAAGGTAGGAAGATAATTTGAGGCTAGCTTGGAGACTCTAGAGTGAAAAAACAAACAAAAAATTATGCCAAATATAGCTGCTTTCTTTGTTATTATCATAACTGTGAAATTTATATAACAGTCTTATAAGAGGAATGCCTTACATGTCCAGTAACTGGAGGGACATCTTGCCTTGTCTCTTTGACTGTTAGAGAATTCTTAGGAAGAAAGACTTACAGCTTTCTTTTATAGTTTACCCTTCTGCTGGTCAGAAGCCTCATAATTGGAATGTGGTGAGGTCACTGAGAAGGGACTGGGATAATTTACTAAGGCCTCCCTGTGGTGCTACCTATGTCCTGTAATCCAGGCATTTGGGAGCTAGGAACAGGACAGGAATTCAGGTCCATCCTGGTCTACTGGTGAGTCTGTGGGTAGCCTGAAGTCTCAGAACTTTCATAAACAAAAGCCAGGCCGTCAACTATACACAAGAGGACTGGAAAATAGTAAAGCTTTAGCCAAGATTCAATCCTCCATAGGAAATGTCAAAGATGCCGATATAAATACATTTATATCTGAAGGTCCGTTAGGAATAAATTACACTATATATTGAAATTTGTACACTGACTGAAACTACTGTCTGAGGAAAATGAATTTCCCATCATAGTGTAAAAAAATGGGAATTGTAAGGTCTAGGATTCTGTATTATTACCTGTTACAGTTCCTCGTCCCGGGAGTTCTCAGTAACTATTCTAAGGAACAGAAGAGCAAATAAAAACTCCAGCTGACAAACTAACAACATTAAACTTGGCAAAGCTAAAGCTTGGAGTAGATGAGACAAACACAGTGTTGTGCAGGACATGAAGCGCGTATGAAATACGGCTCAAATGAGCAGACAGTGTAGGCTCTGCCCATCCACACAGGTTAACCGGTCTCCTGCCTGCTCTCCTGGCTGTGCCATGGTCTCAGGTGTGGCTGACTGGGCAGGAGACCACCATGGGCATAGTAAAGAGATCAGGGACATGGTCTTCCCAGCTGCAGGGAGCACATCATGCCACCAGGTGGTGCCTGTTGTCTGGGGCTGAGACTGCCATAGGACACACGTTGTCATTGGCCTTGTGGCCTTGTGGAACCACGAGCTCTCCATTTCCTGGACCTACAGAATAGAAATGCAGACACTGACATTAGTACTCAGCTCTTTACCGTATATATAATGCTTGGAAATGCAGCATGTAAGAATATTTCTACCCAGATATACTCAGTTTCAGTAACGTAGGACGTTTATATCCAGCCTTTTATAGTATATCTGACATGAAGAAGCATTATTCTCCGAAGTATTTTCTTAGCCATATTATTGAAATATATATTCAACTTAAATTTAATAAGATGTAGTATATTTACTTAGAGCATTTGATAGTGTGTTTTTATATCCTGCTTTTTATAGTATATCTTAAATCCTGGAAAAGTATTGTTTTCCTGACTGAAGTTAGAGCCAAGGAGAAGCTGCTTAAGGAGCTACACTCATTCCTCTAAAACAGTCACCCGACAGCTCAGACACCTTCTACCTCTTCAGGACGTGAGGCGCTCAGGTGGGAAGGCAGCAAACCTCACCAGATGTGGGGAGGGCAGCAGCATTGGGAATCCAGTCGGATATTTACCAGCCCATATCAGTGTATGGTACCCAGCAGCCCAGGAAATGAGCAGCAAGGTGCTTTGGGCAAGTGAGGACTGTACAGTCAGCTGTGAAGTCCCCTCCTTGTCCTTCCTGGTCTGTAAGCGGCCATGGAGAGAGCAGTCTGCCGTCTCCCTGCAGAGCATCACCTCCTGTGTTAGTGAAAGCTGCTAATGACTTGACAGCTTCTGCAGAGCAGTCATGACAGTTGAGGCAGCATGTGGGCATGGGTGCACACGCGTGAGGCCAGCGGTCAGGCTAGGGTCCTGCCTCAGCCGTCTGCTTTGGTTTTCTAATTCGGGGTCTCAGGAGGAGCTGGGACTTGCCCATTAGGCTCAGCTGACTGACCAGTGAACCCCAGGGGTCCACTCACTCAGCTCTGTCTCCCTAGCATTGGAACGCAACACAGGTGCACACATCGCCTGGCCTTTTCACGTGGGCTCTGGGGAGATTTGGAGGTCAGGGCCTCAGGCTTGCGCACGCAGCAAGCACTTTACTGACTGAGCCAGCTCCCAAGCCATAAAGTAATTTTTAAAAGGGAGAAATAACTGAGTGTTAATCTGCACTGGTGTATTAACTTAATAGATCTATCTGAAAATTTTAACTTCTTCTAAGAGGAGAACTTGCACATTTTATAGGAATTGAATTAATAAAAGTTTTAAAAGGGTGCTTTTAGTACTGATTTTAGAGTTGGGAAGATAGCTTTTTAATTTTCTGCTCCTATATACGGTATTTTTCCAAGACTTGAATGTCCTCTCCCAAGTTTATGTATCATGATGCCCCTGAAACAAAAAATATCCTGCAGTGAGTTACTTAGAAAGCGGCATGCGTGCACTGTTTCCTGAGTGCTAATAGCGGGTGCCACACTGCCATTCTCTGTGGAGACGCACGCAAGCCTAGACTTGTCTTGATCGCAGGTTCTGGGCGGGGAAGAGTGTAGAGAGTGGGATTGTGCACACAGGAATACAGGCTCCTTTTCTCACACACTGGTGTCCTAAGGGTTGGTTCTAGTCACTACTCACAACCTATCTCATAGCACAGACAGGCCCTGTGCATGCAGCCTGTTCTTTCCTGGCAAACATTAGCCTGGCCATCAGCAGTGTGAGAGAAGCCACGCTTTACCTCATGTGGCTGCCTCTGTCTCTAGAGAGCAGCTAAACTGCCTTAGCGAAGCAGACTTAAAATGTGCTTGGTGCCTTATTGTTTCCGTGTGGAGCTCAGGGGAACCAGTGTGCCTTCCGTTTGCACTTCCTTGCCGGCTGGGGAGGTGGAGCGTCTCCCTGGCCTGCAGGTCATTTGAGCTTTGTTTCTGTGAATTGCACATTGCTATCTGTCTCACTTTGTAACAGGCCTAAGAGATCATATCACACATGGGCAATTTGTTGTCTAGTCTAGTGTCTGTCATTTGGCCCTGTTTCTGTCATGGTTACCAGACGTTGTTATGAAGGGCCAGACAGTGAGTATTTCAGGCGGGGCCTGTGTTTCTGCAGCCTTTGCCACGTAGAGCATCCTGCACAAGCCAACGGTTCTCAGCCACTTCTCCCACGTCCCCAGGAGACATTCACCAACGTCCAGGGGTATTTTTGTCACTTTAAAGATGACTGCTGCTTATGTCTAGTGGGCAGAGGCCAGAGATCCTTTTCAGTGTCCTGTGGTGCACTACACAGCCCCCAAAACAAATGATGTCAGACTCCAAAACGTCAGTATGTTCTGGTCAGGAGAGAACTGGATACCACTGTGTATCAATAAAACATTCACAGAAACAAACTGGCCACATCAAGCCTGTAAGGTGTGCCTTCCCATCCGTTTTAAGTAGTGTTTATCTGTATTATTAGTTTTGTTTTTGAAATCTCTTTTACCTCAAATAGTTTTTTATATTTTATGGCTTTAATCTTCCTGCCTAAAACCGCAGAGAATGGGTTGCCTATGTGTAATGTTAGCCCAGTATTTCTGAAGCGTGGGTTTGTGTTTGCTTGGTTTGGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046652:ENSRNOT00000072762:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.377
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]