RnoINT0168762 @ rn6
Intron Retention
Gene
ENSRNOG00000022742 | Zfp954
Description
zinc finger protein 954 [Source:RGD Symbol;Acc:1561308]
Coordinates
chr1:69855516-69856331:+
Coord C1 exon
chr1:69855516-69855554
Coord A exon
chr1:69855555-69856204
Coord C2 exon
chr1:69856205-69856331
Length
650 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CAACTTTCTTTATTGTTCAGGGC
3' ss Score
8.48
Exon sequences
Seq C1 exon
GTTTCCCAGTACTCAGTGAAACCTGCCAACCAGGAAGAG
Seq A exon
GTAAGTGGAGGGTGCCCTAGAATCACATTCCTCACTTTCTACATAAGTGACCTCTGGGACTATGGTGTCCTGAGACTCTGTGCTTGGGATTCTCTCTGTCCTTCCATTGGGTTTCCCTGGCACATGCTCAGAATGAAAGGTCCCCACATCCATAGCAGGGATTACATGGCCGCCAGGTTTCCCTTCATGGTAACCATTGGCTGAAGATTCAGAGGTCTTAAAGGTCCAGTGATGACCTTACAGGATGCCTGGAAGCGAGATGGGTTGAGAATGCTGAGAAATGCTCAGGTGTGCATGAGGTCTGCCGGCTTTAGCAGAAGGTAGGAGCTGGGTAGCACAGCAGCTGAGGGCTGAGCCTGCGTACTGAGATGGACCTGTGTGAGACAGATGATTGGGAGGAGCCCAGGTGAATTCACTGATAGAAAGGTGTCTCTTCACAGTAATAGAAAAGCCAGCATGTTCAGGTTCCTGTTATTACTGAATGATGAGCACAGTCATTAGTGGAACCTGGAGGACATCTGGGTGTCAAAGGTTGACAGCCTAGTACCCTCTGAGGTAGGCAGCTGTGTAGAAATGACTGTCTTGAGGATACCAAGAGTCCCTGAGAAGGAGGCTTCATATAAACAAACTCAACTTTCTTTATTGTTCAG
Seq C2 exon
GGCTGCGTGTCCTTTGAGGATGTGGCTGTGTACTTCTCCTGGGAGGAATGGACACTGCTTGATGACTCTCAAAGGCTCCTGTACCAGACGGTGATGACAGAAATCTTCACACTAGTGTCCTCCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022742:ENSRNOT00000042086:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]