RnoINT0168821 @ rn6
Intron Retention
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11346585-11347271:-
Coord C1 exon
chr7:11347187-11347271
Coord A exon
chr7:11346782-11347186
Coord C2 exon
chr7:11346585-11346781
Length
405 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CTCCTGTCTCTCCTTCCTAGGAC
3' ss Score
11.91
Exon sequences
Seq C1 exon
GAGGATGGTCACAGCTGCCGAGAGAAGGCGACCAAGAGCCGCACAGACTCACGGGAGCGGCCAGCCAGGTCGCTCTCCCGGCCAG
Seq A exon
GTGGGCTGTGGGGATTCTCTGAGGGGCTGGGGAGCACGGTCTGGTCGGAGGGTTGTGTAGACAACACAAGGGGCTCCACACAACTCGGCCTGGGGCATACAGGACAGGCCTGCGCTCGGGAGGACATCGGGCTTGGAGGCAAGCACTTTTATCTGTGGAGCCATTTTGCCAGCTGTAGTCCCAGATCTAAAATGTCCTTGAGATCCGGCCAGCTGAGCTGCAGACATTGCAGGAAGCTGGACCCACACAGGGAGGCTGATGCGCCAGCCTGAGATTTGTCCTGGTGCTACAGCCACCCAAGTCACCCGGGTCCAGCCTGGGCTGCAGTGCGGTTAAACACGCTGTGGATCTGCTGCCAGGGGTAGCCTGGCTGCGTCTGCACCTCCTCCTGTCTCTCCTTCCTAG
Seq C2 exon
GACCAAGCTCCCGCAGCCCCGACTCGGACTCGGTGTCGCCGGACTCGTGGGGTGGCCCGGTCCTAGGACCCTGGGACCCCACCTTTACCAGCGACGCGCTGCCGTTCCTGGACAGGCTGCCGAAGCCCAAGGCGGGCCCCAGGCCGCCCTCCATGCACTACTGCGAAGTTTGCAGGGTCAGCTGCGCGGGGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416:ENSRNOT00000061132:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.773
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF128742=zf-met=PU(52.0=19.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACAGCTGCCGAGAGAAG
R:
CAGCTGACCCTGCAAACTTCG
Band lengths:
262-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]