BtaINT0164449 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21382958-21383576:+
Coord C1 exon
chr7:21382958-21383181
Coord A exon
chr7:21383182-21383289
Coord C2 exon
chr7:21383290-21383576
Length
108 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCTCTTCTCTTCCTTCTTAGGAC
3' ss Score
11.24
Exon sequences
Seq C1 exon
AGGCTATGCTTGCTCTCCAGGGACCCAAGGAGCCTACGGGGGCGGTGGGTATGGCCAGGCGCAGCCCCTGCCACAGATGCCCACCGCCGAGGCAGGGCCACCAGCCAGCGTCGCCTGCTCCAGCTACACATATGCCCCAACGAGCAGCGCCCAGCCCATGGCTTCCTCCATCCCCACCCTGCCAGCCTCGTCATCCTTCAGCGCAGCCTCCGCCCCGTACACAG
Seq A exon
GTGAGCCGGCAATGGGCACAGGCCACTCCACTGCTTGCTGCTGCAATACATGTGGTCCTTCTCTCAAAACCAACCATCTCACCCTCTCGCTCTTCTCTTCCTTCTTAG
Seq C2 exon
GACCAAGCTACCCAAGCTATGACGCGTCCTCCTACTCCGTGGCGGGTCCTTACTACCCACCGCTGCTCACCCCACAGATGCAGCCGCCGCCGCCGCCACCCCCACCCCCAAAGCCTGTGGACTCATCCCAGTGGGGTGGCCCAGTAGGCAGTCCCAGTGCCAGCTGCACCAACAGCGTTGCCAAGAAGCTTCCAGTTCCCAGCAAGCTGCCCAGACCCCGGACCGGCCCCCAGCCGCTCCCGCTTCACTACTGTGACATCTGCAAGATCAGCTGTGCCGGCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755:ENSBTAT00000001004:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.539 A=NA C2=0.552
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF128742=zf-met=PU(50.0=13.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCTTGCTCTCCAGGGACC
R:
GACGCGTCATAGCTTGGGTAG
Band lengths:
248-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]