GgaINT0063927 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NLI6]
Coordinates
chrZ:9633080-9634813:-
Coord C1 exon
chrZ:9634595-9634813
Coord A exon
chrZ:9633328-9634594
Coord C2 exon
chrZ:9633080-9633327
Length
1267 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
3' ss Seq
ATTTTATTTTGATCTTTGAGGTA
3' ss Score
1.67
Exon sequences
Seq C1 exon
CTCCAAAAGCAGGATATAGCCAAGGGGCAACTCAATATACTCAAGCCCAGCAAACGCGACAAGTAACAGCTATAAAACCTGCAACCCCAAGTCCAGCAACAACTACGTTTTCTATATATCCAGTATCCTCTACTGTGCAGCCTGTAGCAGCTGCAGCTACTGTTGTTCCATCCTATACTCAAAGTGCAACATACAGTACAACAGCGGTTACTTACTCCG
Seq A exon
GTAAGAATTTTATAGATTATGCTATTGAGATCTTTGCAGTTGTTACAGAAGGTTACAGGATTTAAATGTTCAGAATTTTAGCATTTTGTGTTCAGTTACATCAGCCTACAGAGAAGTATCAACCACTTACATAAAAATATTTTGGCAATATAATGATCTATCTTTAGAAGAGATTTGATGCTTAAATATGCTTATTTTGTCCCATGTGAAAATATACCGTATACTGACAGTGTGTTGAGACTTACCATAAGATTTAGAGAAAAGATGAGGGGGAATAGGAATAAAGAAGGAGACACATCCACACAAATATTAACCCAGGGAAATGGGAAGGAAGCGTGATGCCATGAAACAACAGTTACAGTGGCAGGGAGGAACGATCCATTATAAATCTTATAAGTCTGGGTTGTATTGAACCAAAACAGCAGACTGATCAGTGCTTCAGAGGAAAAGCAAACAAAGAAACAAAAAAGCAATCATCTTTCCTTCAGTAATTAGAAATCCAGAATGAGCTGGCAAACTGGCATATTATAGCTAGTTTGAGCATTTTTATTTTGTTTCTTTTCTGTTTGTAAGAGGGATTTTAAAGGGACTGTCTTGAAACAGTACCTGATCAGAGGGTTAAAGTAGTAGAACCAGTAAATGTAGAAAGTTTGTGGGAAACCTGGCTCAAAGGTAAAATAACCCAGTTTCCTTGACTTATTCAACTTCAGTAGTACCAGTCAAGGAGTGCATACCTAGTGTGTGCTGCAGAGGTTTTAGCAGCCCAGCAGCTTTGCACTAAAACAATTTAAATCTCTGAAGTAGAATGTGATAAAGCAAGTTGTTATATTTTTTGTATTCATTTTTTTCCCCCCTTCCTTTACATAATCTCTGTCTTCATTTTCATCTTGAATCTTGAACTGTAAATCTGGCTCAGAAAAACTGTTTACTTGCCTTTGATAATTATTCTATTCTTGTTACATCATAATGAGACCTCCAGGAATTTTCACATACTCTTTAGGGATGCTAGTTATATCCAACAACATAACTGTGCTTTGCAGAGATGTGTCAAAAATCAAATAAGTTTCTGATAAGAGTGGTATGTTACGTGTTTGTGTACTGTGAAACATTATGAAAAACCCAGACTGCTTAACAAGATCTCAATACTTTGTTCGTATTCTGCCCTGCTCCCTCAACTTTTATTACAACGCATGCTTGTAATTTATGTGTTATGTAATTGATACATGATGTACAGTGATGTAATATTTATTTTATTTTGATCTTTGAG
Seq C2 exon
GTACCTCTTATTCTGGCTATGAGGCTGCAGTGTATTCAGCTGCGTCGTCCTATTATCAGCAGCAGCAGCAGCAACAGAAACAGGCAGCGGCAGCTGCTGCTGCTGCTGCAGCGACAGCTGCTTGGACAGGGACCACCTTCACTAAAAAGGCACCATTCCAAAATAAGCAACTGAAACCAAAACAACCTCCCAAACCACCCCAGATCCACTACTGTGATGTTTGTAAGATCAGCTGTGCTGGACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003235:ENSGALT00000005121:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF128742=zf-met=PU(52.0=15.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACCTGCAACCCCAAGTCC
R:
GGGTGGTTTGGGAGGTTGTTT
Band lengths:
346-1613
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]