HsaINT0185621 @ hg19
Intron Retention
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:29189]
Coordinates
chr19:3831301-3831876:-
Coord C1 exon
chr19:3831658-3831876
Coord A exon
chr19:3831555-3831657
Coord C2 exon
chr19:3831301-3831554
Length
103 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
TTGTTTTCTCTGCTGCTCAGCAC
3' ss Score
5.08
Exon sequences
Seq C1 exon
GGACCCAAGAAGCCTGCGGGCAGCCCAGCCCCCATGGCAGTCACAGCCACGCTCAGCCCCCACAGCAGGCGCCCATAGTGGAGTCCGGACAGCCAGCGAGCACCTTGTCCTCGGGATACACCTACCCCACGGCGACAGGCGTCCAGCCCGAGTCGTCAGCTTCCATCGTGACCTCCTACCCCCCGCCCTCCTACAACCCCACCTGCACCGCCTACACGG
Seq A exon
GTAAGACCAGCGTTCCTTGCCCAGGTGGTCTGCCCGTCGGTCCCCACTTCAACTCAGTGGAATCAGCATCTCCCCCCGACTCATTGTTTTCTCTGCTGCTCAG
Seq C2 exon
CACCAAGCTACCCGAACTATGACGCGTCGGTGTACTCCGCTGCCAGCCCTTTCTATCCTCCAGCGCAGCCCCCGCCTCCCCCGGGACCCCCGCAGCAGCTGCCCCCGCCGCCCGCGCCTGCAGGCTCAGGAAGCAGCCCCAGGGCCGACTCGAAGCCACCGCTTCCCAGCAAGCTGCCGAGACCCAAGGCGGGGCCCAGGCAGCTCCAGCTTCACTACTGCGACATCTGCAAGATCAGCTGCGCTGGCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-ZFR2:NM_015174:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.878 A=NA C2=0.635
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF128742=zf-met=PU(52.0=15.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTACAACCCCACCTGCA
R:
GTCGCAGTAGTGAAGCTGGAG
Band lengths:
256-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)