RnoINT0168993 @ rn6
Intron Retention
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231908553-231909903:+
Coord C1 exon
chr2:231908553-231909154
Coord A exon
chr2:231909155-231909764
Coord C2 exon
chr2:231909765-231909903
Length
610 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GTCAAACCATTCTATTTCAGGAA
3' ss Score
7.94
Exon sequences
Seq C1 exon
GATTGAAAAACATTGGTTTTCAGGACAATAAGAACTTCCAAAGGTTTCCATTTTTAAGTGGAGCCTCAGTTCCCTTTGTCACTTTGCCACCAGATGATGGACCAGCAGTCTTAGATTCTTGTTCATTTATGATCGATGATGACACACGAGAGCCTTCTGGTTCTTCCAGGTTGAACCTGTGTGAAGAATCAGGTCTTTCATTTGACCTTGGACTTGAGGACCAGGATGGGATTCCACGAGATGTCTTACTGCTTCCTAAGAGTTCTACTCAAAGCAAGTGGCTGAAATATCAAAACCCATCCCACTGCAACTCAGCTGCTCTGAACAGAATTGCCAGTGAAGTGACAGAGGATCTCTCTGCTGAGGCTGTCTCTGGCTTGCATTTTAGCCACACAAGTGAGAGTGAGAGTTCTGTAGACCCTGTGCACTTGCAGATGATAAAAGGCATGCTCTATCAACAGCAGCAGGATTTTACCAGTCAAGATTTGGTTTCCAGACAGAAAGCTCTCTCTCTGAATTTAAATCAGACCTCCAGGACTGGGGAACTTCGGACTGCGTTAGGAAGCTCTGCCAGCAGTAATTGCAGAGTCAGGGATGGACAG
Seq A exon
GTGAGGTTTTCTCATGGTGCATTTTCACCCTGAGGCCCTGTGGGTGCCAACAAAGGCTAGCAGGATAGCTTGGAAACAGCTGACTTTCTGATTGGACAGTTGTTTTCACACCTTTCCCAGGAGTTATGAAGACTGACTTGTGTATTTGAAAGTCTCTAGGGCAGTACTGCCATATAAAAAGTACTTAATACATGTTGGCTCTTATTTCTCTGATCTCACTGTGATTGTTTTCACTGTTGACTATCAAATCAGTCCTGCTGATTGAATTATTAAGGAGAAGGCACATACATCAATTTGCCATGAATCATTATTATATTAGTGACAGAAATAGAACTATAATGTGATCCACTTAGAGTAAAACATATTTAAAATCATATTAAGAGGCCGATGAAAAGAGTTAAAAGTGCCGTGTCATGTCATTCAAGCTTGTCATTCAAGCTTGTCATTCAGGCTTGTCATTCAGACTCTATTTGGTTTTTTATTCTAGATAGTGGATTCTAAAAATCAAAAGTAATTAGTATTTTTTCAATGTATTTGAAAAACAATTTATTGGTTAAACAGTGATTTTTTTTTCCTTTGAGTTATAATAGGTCAAACCATTCTATTTCAG
Seq C2 exon
GAAATAAATAATTCTGATCTATGCTTCCCAAATGGGCAGAAAATACTATCGGCTTACCTTCCTCAAAGGCAAGTTCACATACCAGCTGTTTTCCAGTCTCCTGCTCACTATCGGCAGATCTTTACGTCTTCCATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980:ENSRNOT00000014695:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTCTCTGGCTTGCATTT
R:
ATCTGCCGATAGTGAGCAGGA
Band lengths:
357-967
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]