RnoINT0169188 @ rn6
Intron Retention
Gene
ENSRNOG00000029220 | Zmym5
Description
zinc finger MYM-type containing 5 [Source:RGD Symbol;Acc:1306353]
Coordinates
chr15:37047262-37048294:-
Coord C1 exon
chr15:37048132-37048294
Coord A exon
chr15:37047469-37048131
Coord C2 exon
chr15:37047262-37047468
Length
663 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGC
5' ss Score
3.9
3' ss Seq
GAAATTTTGTTTTCTTTTAGGTT
3' ss Score
10.91
Exon sequences
Seq C1 exon
AGATTCTCCTGTGAAACCCACAACTATTGTTCCTCCAGTGGAGTCAAGCAAGTCCTTACGAGAATTTCATAGTGCATCTCCATCTCCCTATGAAAACTGCCAGAGTCTTAGGAAAGAAGTTTTTACTAAGTCAAGATGTATAATCTGTAATAAATTAGGAGAG
Seq A exon
GTCTGCTCTTCATACTGTTACTGTTTAGACTCTTCTAGTCTAGGCTTTGCCATCTACCCAATGTCCATATCCTAAATATTCAGATTGGAAGGACTACTAAGGGTGTTAGAATTTTCTTTATTTAAAAAATTTACTACTGAGTGGTGGTGAACACCTTTAATTCCAACATTTGGGAGGTGGAGACAGGCATATCTCTGTGGATTTGAGGTCAGCCTGGTGTACTTAGTGAGTTCCAGGACAGACAGTTCTATGTACTAAACAGATAGCAACACACACACACACACAACACACACAGAGTTCTCATAGTGTCTCTGTGGAATTAGTTGCGATAATTCAGTAATTTCAGGATAATGAAGCCACAGATCCTACAGGAATGTGGAACAAATGGTTTGATACATTTTCAAGAGGAGGACCAGGACATTGAGGCAGTCCTTTGTTTTACGTTGTCCTTGGTAACTAAATCAGATATTGAGTAGCTTTGGGAGCCATTCAATCAAGGTTGTACATTTATTTGTTACAGCTTTCAAACCGTCTTACTGTACATTCTAAGGGTGGATAATGATTCCCTTGATCTACTTCCCAAATACTCATAAGGGAAAAATCTAAATACTGTAGGGCAATAAATTGTAAAATACTGTCTTAAGAAATTTTGTTTTCTTTTAG
Seq C2 exon
GTTCGCCATGAAATCAGTGTTAACAGTATAACACATAAACTGTGTAGTAACAGTTGCTTTAATGAATACAGATTGACCAATGGTCTCATAATGAACTGCTGTGAACAATGTAGCAAATATATGCCCAAGAGTACTGGACACAGCATTCTGATTACAGGACAGCAAAAGAGATTCTGCTGCCTGAGTTGTGCTGACGAATATAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029220:ENSRNOT00000047731:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(40.0=29.1)
A:
NA
C2:
PF064679=zf-FCS=PD(55.0=31.9),PF064679=zf-FCS=WD(100=60.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCACAACTATTGTTCCTCCA
R:
ATTCGTCAGCACAACTCAGGC
Band lengths:
347-1010
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]