Special

ENSG00000163554 @ hg19

Biotype
protein_coding
Gene Symbol
SPTA1
Description
spectrin, alpha, erythrocytic 1 (elliptocytosis 2) [Source:HGNC Symbol;Acc:11272]
Coordinates
chr1:158580278-158656488:-
Assembly
hg19
Other assemblies
hg38

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
130
chr1:158620347-158620476
-
12.38
4.74
0
Exon Skipping
18
chr1:158587829-158587846
-
79.63
21.98
0
Exon Skipping
209
chr1:158607823-158608031
-
90.61
68.42
0
Intron Retention
1556
chr1:158639577-158641132
-
7.16
32.35
0
Intron Retention
1815
chr1:158624539-158626353
-
18.6
15.76
0
Intron Retention
1271
chr1:158606552-158607822
-
12.39
37.96
0
Intron Retention
2516
chr1:158590257-158592772
-
20.81
11.12
0
Intron Retention
450
chr1:158587379-158587828
-
14.61
32.51
0
Intron Retention
2133
chr1:158585194-158587326
-
11.72
19.86
0
Intron Retention
1427
chr1:158581180-158582606
-
20.89
49.5
0
Intron Retention
566
chr1:158647625-158648190
-
10.58
32.31
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000026532 Spta1 1-to-1
Mouse mm9 ENSMUSG00000026532 Spna1 1-to-1
Rat rn6 ENSRNOG00000003537 Spta1 1-to-1
Cow bosTau6 ENSBTAG00000000888 SPTA1 1-to-1
Chicken galGal4 ENSGALG00000004719 SPTAN1 2-to-1
Chicken galGal3 ENSGALG00000004719 SPTAN1 2-to-1
Zebrafish danRer10 ENSDARG00000019231 spna2 2-to-1
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