Special

ENSG00000163554 @ hg38

Biotype
protein_coding
Gene Symbol
SPTA1
Description
spectrin alpha, erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11272]
Coordinates
chr1:158610706-158686698:-
Assembly
hg38
Other assemblies
hg19

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
-
89.86
31.98
0
Alternative 5'ss
18
chr1:158622965-158622982
-
10.14
31.98
0
Exon Skipping
130
chr1:158650557-158650686
-
18.6
50.29
0
Exon Skipping
18
chr1:158618039-158618056
-
77.97
27.94
0
Exon Skipping
209
chr1:158638033-158638241
-
90.83
66.67
0
Exon Skipping
133
chr1:158634543-158634675
-
97.98
11.76
0
Intron Retention
1556
chr1:158669787-158671342
-
7.16
32.35
0
Intron Retention
1815
chr1:158654749-158656563
-
18.6
15.76
0
Intron Retention
1271
chr1:158636762-158638032
-
10.77
37.96
0
Intron Retention
2516
chr1:158620467-158622982
-
20.81
11.12
0
Intron Retention
450
chr1:158617589-158618038
-
15.24
31.89
0
Intron Retention
2133
chr1:158615404-158617536
-
11.35
20.84
0
Intron Retention
1427
chr1:158611390-158612816
-
20.67
48.85
0
Intron Retention
566
chr1:158677835-158678400
-
10.58
32.31
0
Intron Retention
909
chr1:158614307-158615215
-
10.25
19.81
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000026532 Spta1 1-to-1
Mouse mm9 ENSMUSG00000026532 Spna1 1-to-1
Rat rn6 ENSRNOG00000003537 Spta1 1-to-1
Cow bosTau6 ENSBTAG00000000888 SPTA1 1-to-1
Chicken galGal3 ENSGALG00000004719 SPTAN1 2-to-1
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