Special

FBgn0003944 @ dm6

Biotype
protein_coding
Gene Symbol
Ubx
Description
The gene Ultrabithorax is referred to in FlyBase by the symbol DmelUbx (CG10388, FBgn0003944). It is a protein_coding_gene from Dmel. It has 7 annotated transcripts and 7 polypeptides (6 unique). Gene sequence location is 3R:16656623..16734426. Its molecular function is described by 6 unique terms, many of which group under: binding; nucleic acid binding; organic cyclic compound binding; protein binding; DNA binding. It is involved in the biological process described with 21 unique terms, many of which group under: imaginal disc morphogenesis; specification of segmental identity, thorax; regulation of muscle organ development; muscle cell fate specification; renal system development. 453 alleles are reported. The phenotypes of these alleles manifest in: eye-antennal disc; digestive system; foregut; adult neuron; presumptive embryonic/larval peripheral nervous system. The phenotypic classes of alleles include: visible; increased mortality during development; lethal - all die before end of prepupal stage; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed at stages throughout embryogenesis, during early pupal stages.
Coordinates
chr3R:16656623-16734426:-
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
51
chr3R:16725256-16725306
-
58.8
83.16
0
Exon Skipping
51
chr3R:16710562-16710612
-
82.82
73.59
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000037965 HOXC8 2-to-4
Human hg38 ENSG00000120068 HOXB8 2-to-4
Human hg38 ENSG00000175879 HOXD8 2-to-4
Human hg38 ENSG00000197757 HOXC6 2-to-4
Human hg19 ENSG00000037965 HOXC8 2-to-4
Human hg19 ENSG00000120068 HOXB8 2-to-4
Human hg19 ENSG00000175879 HOXD8 2-to-4
Human hg19 ENSG00000197757 HOXC6 2-to-4
Mouse mm10 ENSMUSG00000001657 Hoxc8 2-to-4
Mouse mm10 ENSMUSG00000001661 Hoxc6 2-to-4
Mouse mm10 ENSMUSG00000027102 Hoxd8 2-to-4
Mouse mm10 ENSMUSG00000056648 Hoxb8 2-to-4
Mouse mm9 ENSMUSG00000001657 Hoxc8 2-to-4
Mouse mm9 ENSMUSG00000001661 Hoxc6 2-to-4
Mouse mm9 ENSMUSG00000027102 Hoxd8 2-to-4
Mouse mm9 ENSMUSG00000056648 Hoxb8 2-to-4
Rat rn6 ENSRNOG00000007585 Hoxb8 2-to-4
Rat rn6 ENSRNOG00000016442 Hoxc6 2-to-4
Rat rn6 ENSRNOG00000028619 Hoxc8 2-to-4
Rat rn6 ENSRNOG00000042480 Hoxd8 2-to-4
Cow bosTau6 ENSBTAG00000009238 HOXC6 2-to-2
Cow bosTau6 ENSBTAG00000012149 HOXC8 2-to-2
Zebrafish danRer10 ENSDARG00000054025 hoxb8b 2-to-5
Zebrafish danRer10 ENSDARG00000056027 hoxb8a 2-to-5
Zebrafish danRer10 ENSDARG00000070343 hoxc6a 2-to-5
Zebrafish danRer10 ENSDARG00000070346 hoxc8a 2-to-5
Zebrafish danRer10 ENSDARG00000101954 hoxc6b 2-to-5