Special

FBgn0014870 @ dm6

Biotype
protein_coding
Gene Symbol
Psi
Description
The gene P-element somatic inhibitor is referred to in FlyBase by the symbol DmelPsi (CG8912, FBgn0014870). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (3 unique). Gene sequence location is 2R:16861321..16867714. Its molecular function is described by: protein binding; mRNA binding. It is involved in the biological process described with 7 unique terms, many of which group under: negative regulation of mRNA splicing, via spliceosome; reproductive process; heterocycle biosynthetic process; multi-organism reproductive process; male gamete generation. 16 alleles are reported. The phenotypes of these alleles manifest in: spermatid; onion stage spermatid; testis; seminal vesicle; trichogen cell. The phenotypic classes of alleles include: some die during larval stage; lethal - all die before end of prepupal stage; phenotype; mating defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages.
Coordinates
chr2R:16861321-16867714:-
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
3
chr2R:16865031-16865033
-
44.84
82.46
0
Alternative 3'ss
6
chr2R:16865031-16865036
-
48.8
75.92
0
Intron Retention
58
chr2R:16865034-16865091
-
5.02
100
0
Intron Retention
465
chr2R:16864104-16864568
-
21.82
78.08
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000088247 KHSRP 1-to-3
Human hg38 ENSG00000107164 FUBP3 1-to-3
Human hg38 ENSG00000162613 FUBP1 1-to-3
Human hg19 ENSG00000088247 KHSRP 1-to-3
Human hg19 ENSG00000107164 FUBP3 1-to-3
Human hg19 ENSG00000162613 FUBP1 1-to-3
Mouse mm10 ENSMUSG00000007670 Khsrp 1-to-3
Mouse mm10 ENSMUSG00000026843 Fubp3 1-to-3
Mouse mm10 ENSMUSG00000028034 Fubp1 1-to-3
Mouse mm9 ENSMUSG00000007670 Khsrp 1-to-3
Mouse mm9 ENSMUSG00000026843 Fubp3 1-to-3
Mouse mm9 ENSMUSG00000028034 Fubp1 1-to-3
Rat rn6 ENSRNOG00000009139 Fubp3 1-to-3
Rat rn6 ENSRNOG00000043370 Fubp1 1-to-3
Rat rn6 ENSRNOG00000047628 Khsrp 1-to-3
Cow bosTau6 ENSBTAG00000008926 FUBP1 1-to-3
Cow bosTau6 ENSBTAG00000013072 FUBP3 1-to-3
Cow bosTau6 ENSBTAG00000021018 KHSRP 1-to-3
Chicken galGal4 ENSGALG00000003941 FUBP3 1-to-3
Chicken galGal4 ENSGALG00000008939 FUBP1 1-to-3
Chicken galGal3 ENSGALG00000003941 FUBP3 1-to-3
Chicken galGal3 ENSGALG00000008939 FUBP1 1-to-3
Zebrafish danRer10 ENSDARG00000026489 khsrp 1-to-3
Zebrafish danRer10 ENSDARG00000029248 fubp1 1-to-3
Zebrafish danRer10 ENSDARG00000086896 FUBP3 1-to-3