Special

FBgn0035677 @ dm6

Biotype
protein_coding
Gene Symbol
CG13293
Description
This gene is referred to in FlyBase by the symbol DmelCG13293 (FBgn0035677). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (3 unique). Gene sequence location is 3L:6082883..6092188. Its molecular function is described by: transcription corepressor activity. It is involved in the biological process described with: transcription, DNA-templated. 8 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 06-24 hour embryonic stages, during early larval stages, at stages throughout the pupal period.
Coordinates
chr3L:6082883-6092188:+
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
14.58
75.68
0
Alternative 3'ss
3
chr3L:6087217-6087219
+
85.42
75.68
0
Alternative 3'ss
0
NA
+
83.2
27.31
0
Alternative 3'ss
12
chr3L:6087943-6087954
+
16.8
27.31
0
Alternative 3'ss
0
NA
+
53.87
93.1
0
Alternative 3'ss
15
chr3L:6088691-6088705
+
46.13
93.1
0
Alternative 5'ss
0
NA
+
16.86
27.31
0
Alternative 5'ss
12
chr3L:6087887-6087898
+
83.14
27.31
0
Intron Retention
56
chr3L:6087899-6087954
+
15.99
100
0
Intron Retention
613
chr3L:6088078-6088690
+
22.71
100
0
Intron Retention
58
chr3L:6089152-6089209
+
7.13
93.75
0
Intron Retention
61
chr3L:6089465-6089525
+
10.98
86.67
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000173611 SCAI 1-to-1
Human hg19 ENSG00000173611 C9orf126 1-to-1
Mouse mm10 ENSMUSG00000035236 Scai 1-to-1
Mouse mm9 ENSMUSG00000035236 Scai 1-to-1
Rat rn6 ENSRNOG00000025278 Scai 1-to-1
Cow bosTau6 ENSBTAG00000015553 SCAI 1-to-1
Chicken galGal4 ENSGALG00000001037 SCAI 1-to-1
Chicken galGal3 ENSGALG00000001037 SCAI 1-to-1
Zebrafish danRer10 ENSDARG00000060865 scai 1-to-1