Special

FBgn0263197 @ dm6

Biotype
protein_coding
Gene Symbol
Patronin
Description
The gene Patronin is referred to in FlyBase by the symbol DmelPatronin (CG33130, FBgn0263197). It is a protein_coding_gene from Dmel. It has 14 annotated transcripts and 14 polypeptides (13 unique). Gene sequence location is 2R:17519024..17535866. Its molecular function is described by: microtubule minus-end binding; spectrin binding; calmodulin binding; microtubule binding. It is involved in the biological process described with 6 unique terms, many of which group under: developmental process; cytoskeleton organization; negative regulation of cellular process; plasma membrane bounded cell projection organization; microtubule-based process. 36 alleles are reported. The phenotypes of these alleles manifest in: cellular anatomical entity; intracellular non-membrane-bounded organelle; cytoskeleton; organelle; plasma membrane bounded cell projection. The phenotypic classes of alleles include: viable; size defective; increased mortality; phenotype.
Coordinates
chr2R:17519024-17535866:-
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
15.99
60.97
0
Alternative 3'ss
96
chr2R:17526318-17526413
-
19.2
31.55
0
Alternative 3'ss
99
chr2R:17526318-17526416
-
64.81
58.4
0
Alternative 3'ss
0
NA
-
83.18
74.73
0
Alternative 3'ss
6
chr2R:17521901-17521906
-
16.82
74.73
0
Alternative 5'ss
159
chr2R:17535694-17535852
-
93.29
60.42
0
Alternative 5'ss
0
NA
-
53.65
97.84
0
Alternative 5'ss
126
chr2R:17521706-17521831
-
46.35
97.84
0
Exon Skipping
147
chr2R:17526834-17526980
-
68.47
100
0
Exon Skipping
75
chr2R:17523824-17523898
-
66.3
99.37
0
Exon Skipping
72
chr2R:17523500-17523571
-
32.31
100
0
Exon Skipping
108
chr2R:17522853-17522960
-
45.94
100
0
Exon Skipping
69
chr2R:17521832-17521900
-
67.19
95.08
0
Exon Skipping
153
chr2R:17529982-17530134
-
33.34
92.35
0
Exon Skipping
105
chr2R:17529087-17529191
-
80.16
98.59
0
Exon Skipping
231
chr2R:17528622-17528852
-
82.95
78.05
0
Exon Skipping
63
chr2R:17528313-17528375
-
80.83
75.96
0
Intron Retention
3155
chr2R:17520929-17524083
-
71.27
100
0
Intron Retention
1855
chr2R:17529192-17531046
-
15.56
94.12
0
Intron Retention
234
chr2R:17528853-17529086
-
5.02
69.01
0
Intron Retention
246
chr2R:17528376-17528621
-
10.68
81.51
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000076826 CAMSAP3 1-to-3
Human hg38 ENSG00000118200 CAMSAP2 1-to-3
Human hg38 ENSG00000130559 CAMSAP1 1-to-3
Human hg19 ENSG00000076826 KIAA1543 1-to-3
Human hg19 ENSG00000118200 CAMSAP1L1 1-to-3
Human hg19 ENSG00000130559 CAMSAP1 1-to-3
Mouse mm10 ENSMUSG00000026933 Camsap1 1-to-3
Mouse mm10 ENSMUSG00000041570 Camsap2 1-to-3
Mouse mm10 ENSMUSG00000044433 Camsap3 1-to-3
Mouse mm9 ENSMUSG00000026933 Camsap1 1-to-3
Mouse mm9 ENSMUSG00000041570 Camsap1l1 1-to-3
Mouse mm9 ENSMUSG00000044433 2310057J16Rik 1-to-3
Rat rn6 ENSRNOG00000000986 Camsap3 1-to-3
Rat rn6 ENSRNOG00000008741 Camsap2 1-to-3
Rat rn6 ENSRNOG00000017883 Camsap1 1-to-3
Cow bosTau6 ENSBTAG00000006008 CAMSAP1 1-to-3
Cow bosTau6 ENSBTAG00000008153 CAMSAP2 1-to-3
Cow bosTau6 ENSBTAG00000011356 CAMSAP3 1-to-3
Chicken galGal4 ENSGALG00000001692 CAMSAP1 1-to-2
Chicken galGal4 ENSGALG00000002145 CAMSAP2 1-to-2
Chicken galGal3 ENSGALG00000001692 CAMSAP1 1-to-2
Chicken galGal3 ENSGALG00000002145 CAMSAP2 1-to-2
Zebrafish danRer10 ENSDARG00000035122 camsap1b 1-to-6
Zebrafish danRer10 ENSDARG00000059475 CAMSAP3 (1 of 2) 1-to-6
Zebrafish danRer10 ENSDARG00000059965 camsap2b 1-to-6
Zebrafish danRer10 ENSDARG00000062173 camsap2a 1-to-6
Zebrafish danRer10 ENSDARG00000091359 CAMSAP3 (2 of 2) 1-to-6