BtaALTA0002673-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13448637-13455425:-
Coord C1 exon
chr6:13455325-13455425
Coord A exon
chr6:13448725-13448739
Coord C2 exon
chr6:13448637-13448724
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTC
5' ss Score
6.49
3' ss Seq
ACCTCCTGCCAACCTACCAGCCT
3' ss Score
3.22
Exon sequences
Seq C1 exon
GAGGACCTAAAGGAGCTGGGTGATGACTCCCTCCCCAGCAGTCAGTTCCTGGACGGGATGAATTACCTGCGCTACAGCTTGGAGGGGGGCCGCTCCGACAG
Seq A exon
CCTTCGATCCTTCAG
Seq C2 exon
TTCCGACAGGTCTCACACCCTGAGCCATGCCTCGTACCTGAGGGACAGTGCCATGATCGACGACGCAGTTGTGATCCCCAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392-62-66,62-65-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.042
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACCTGCGCTACAGCTTGG
R:
ATCACAACTGCGTCGTCGATC
Band lengths:
115-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development