RnoALTA0003441-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231281213-231286291:-
Coord C1 exon
chr2:231286176-231286291
Coord A exon
chr2:231281301-231281315
Coord C2 exon
chr2:231281213-231281300
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTC
5' ss Score
6.49
3' ss Seq
ACCTCCTGCCAACCTACCAGCCT
3' ss Score
3.22
Exon sequences
Seq C1 exon
GAATATCTCAGGCCAGAAGATCTCAAGGAGCTTGGTGATGACTCGCTACCCAGCAGTCAGTTCCTGGATGGCATGAACTACCTTCGGTACAGTCTGGAGGGCGGAAGATCTGACAG
Seq A exon
CCTCCGGTCCTTCAG
Seq C2 exon
TTCCGACAGGTCTCACACTCTGAGCCACGCATCGTACCTGAGGGACAGTGCCATGATCGACGACACGGTTGTGATCCCCAGCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076-66-52,66-51-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.352 A=NA C2=0.092
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCGGTACAGTCTGGAGG
R:
ACAACCGTGTCGTCGATCATG
Band lengths:
109-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]