RnoEX0009347 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231281213-231286291:-
Coord C1 exon
chr2:231286176-231286291
Coord A exon
chr2:231283643-231283654
Coord C2 exon
chr2:231281213-231281315
Length
12 bp
Sequences
Splice sites
3' ss Seq
ATTTGGTATGCTCGCCATAGTAC
3' ss Score
2.72
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GAATATCTCAGGCCAGAAGATCTCAAGGAGCTTGGTGATGACTCGCTACCCAGCAGTCAGTTCCTGGATGGCATGAACTACCTTCGGTACAGTCTGGAGGGCGGAAGATCTGACAG
Seq A exon
TACCATTCCCAG
Seq C2 exon
CCTCCGGTCCTTCAGTTCCGACAGGTCTCACACTCTGAGCCACGCATCGTACCTGAGGGACAGTGCCATGATCGACGACACGGTTGTGATCCCCAGCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076-'66-51,'66-50,67-51
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.352 A=0.600 C2=0.092
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000080637fB1058
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGTCAGTTCCTGGATGG
R:
CAGAGTGTGAGACCTGTCGGA
Band lengths:
103-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]