BtaEX0003406 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13448637-13455469:-
Coord C1 exon
chr6:13455325-13455469
Coord A exon
chr6:13453150-13453161
Coord C2 exon
chr6:13448637-13448739
Length
12 bp
Sequences
Splice sites
3' ss Seq
ATTTGGTGTGCTTTCAATAGTAC
3' ss Score
5.39
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTGATGACACAATGACGGGTGATGGGGGAGAGTACCTTAGACCTGAGGACCTAAAGGAGCTGGGTGATGACTCCCTCCCCAGCAGTCAGTTCCTGGACGGGATGAATTACCTGCGCTACAGCTTGGAGGGGGGCCGCTCCGACAG
Seq A exon
TACCATACCCAG
Seq C2 exon
CCTTCGATCCTTCAGTTCCGACAGGTCTCACACCCTGAGCCATGCCTCGTACCTGAGGGACAGTGCCATGATCGACGACGCAGTTGTGATCCCCAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392-MICROEX10
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTTCCTGGACGGGATGAA
R:
TGTGAGACCTGTCGGAACTGA
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development