GgaEX0018073 @ galGal3
Exon Skipping
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58344081-58349089:-
Coord C1 exon
chr4:58348945-58349089
Coord A exon
chr4:58347548-58347559
Coord C2 exon
chr4:58344081-58344183
Length
12 bp
Sequences
Splice sites
3' ss Seq
TTTTTCATATGCTTACATAGCAC
3' ss Score
6.34
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTGATGATACAATGACAGGAGATGGAGGAGAGTACCTTAGGCCAGAAGACCTCAAAGAACTAGGAGATGACTCTTTACCAAGCAGCCAGTTCTTAGATGGTATGAACTACCTGAGGTACAGCTTGGAAGGAGGGCGATCTGACAG
Seq A exon
CACCATGCCCAG
Seq C2 exon
CCTGCGATCCTTCAGTTCAGACAGGTCTCACACACTGAGCCATGCCTCCTACCTGAGGGACAGTGCCATGATTGACGACACTGTTGTAATCCCTAGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'32-38,'32-36,33-38
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=1.000 C2=0.187
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTACAGCTTGGAAGGAGGG
R:
GTCAATCATGGCACTGTCCCT
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]