GgaALTA0006356-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58344081-58349089:-
Coord C1 exon
chr4:58348945-58349089
Coord A exon
chr4:58344169-58344183
Coord C2 exon
chr4:58344081-58344168
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
GCATCCTACCAACCTACCAGCCT
3' ss Score
1.62
Exon sequences
Seq C1 exon
GTGATGATACAATGACAGGAGATGGAGGAGAGTACCTTAGGCCAGAAGACCTCAAAGAACTAGGAGATGACTCTTTACCAAGCAGCCAGTTCTTAGATGGTATGAACTACCTGAGGTACAGCTTGGAAGGAGGGCGATCTGACAG
Seq A exon
CCTGCGATCCTTCAG
Seq C2 exon
TTCAGACAGGTCTCACACACTGAGCCATGCCTCCTACCTGAGGGACAGTGCCATGATTGACGACACTGTTGTAATCCCTAGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-32-39,32-38-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=NA C2=0.187
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTACAGCTTGGAAGGAGGG
R:
AACAGTGTCGTCAATCATGGCA
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]