MmuALTA0001564-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126976845-126981944:-
Coord C1 exon
chr3:126981800-126981944
Coord A exon
chr3:126976933-126976947
Coord C2 exon
chr3:126976845-126976932
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTC
5' ss Score
6.49
3' ss Seq
ATGACCTGCCAACCTACCAGCCT
3' ss Score
2.27
Exon sequences
Seq C1 exon
GTGATGACACTGTGACAGGTGATGGGGGAGAATACCTCAGGCCAGAAGATCTCAAGGAGCTCGGAGATGACTCACTGCCCAGCAGTCAGTTCCTGGATGGCATGAACTACCTTCGGTACAGTCTGGAGGGAGGAAGATCCGACAG
Seq A exon
CCTCCGGTCCTTCAG
Seq C2 exon
TTCCGACAGGTCTCACACTCTGAGCCATGCATCGTACCTGAGGGACAGTGCCATGATTGACGACACGGTTGTGATCCCCAGCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-77-85,77-84,77-83-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTCGGAGATGACTCACT
R:
CAGAGTGTGAGACCTGTCGGA
Band lengths:
112-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types