GgaEX1065930 @ galGal3
Exon Skipping
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58343374-58349089:-
Coord C1 exon
chr4:58348945-58349089
Coord A exon
chr4:58344081-58344183
Coord C2 exon
chr4:58343374-58343477
Length
103 bp
Sequences
Splice sites
3' ss Seq
GCATCCTACCAACCTACCAGCCT
3' ss Score
1.62
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGATGATACAATGACAGGAGATGGAGGAGAGTACCTTAGGCCAGAAGACCTCAAAGAACTAGGAGATGACTCTTTACCAAGCAGCCAGTTCTTAGATGGTATGAACTACCTGAGGTACAGCTTGGAAGGAGGGCGATCTGACAG
Seq A exon
CCTGCGATCCTTCAGTTCAGACAGGTCTCACACACTGAGCCATGCCTCCTACCTGAGGGACAGTGCCATGATTGACGACACTGTTGTAATCCCTAGCCAGCAG
Seq C2 exon
GTAACTACTCTGGCCAAAGAAGCAGAAAGGAATTCATATCGCTTAAGCTGGGGGCCTGAAAACTTGGACAATGTGGCTCTTTCTTCCAGCCCTATTCACTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'32-40,'32-38,35-40=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=0.187 C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079115=ZU5=PU(1.0=2.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAATGACAGGAGATGGAGGAGA
R:
CCTGAGTGAATAGGGCTGGAA
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]