MmuEX0004892 @ mm10
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126976051-126981944:-
Coord C1 exon
chr3:126981800-126981944
Coord A exon
chr3:126976845-126976947
Coord C2 exon
chr3:126976051-126976154
Length
103 bp
Sequences
Splice sites
3' ss Seq
ATGACCTGCCAACCTACCAGCCT
3' ss Score
2.27
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGATGACACTGTGACAGGTGATGGGGGAGAATACCTCAGGCCAGAAGATCTCAAGGAGCTCGGAGATGACTCACTGCCCAGCAGTCAGTTCCTGGATGGCATGAACTACCTTCGGTACAGTCTGGAGGGAGGAAGATCCGACAG
Seq A exon
CCTCCGGTCCTTCAGTTCCGACAGGTCTCACACTCTGAGCCATGCATCGTACCTGAGGGACAGTGCCATGATTGACGACACGGTTGTGATCCCCAGCCACCAG
Seq C2 exon
GTGTCTGCGCTAGCCAAGGAGGCAGAAAGGAATTCTTATCGTCTGAGCTGGGGCACTGAGAACTTAGACAACGTGGCTCTTTCTTCCAGTCCTATTCATTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-'77-86,'77-84,80-86
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=0.091 C2=0.055
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079115=ZU5=PU(1.0=2.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGACACTGTGACAGGTGA
R:
GAATAGGACTGGAAGAAAGAGCCA
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types