RnoEX0009348 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231280327-231283654:-
Coord C1 exon
chr2:231283643-231283654
Coord A exon
chr2:231281213-231281300
Coord C2 exon
chr2:231280327-231280430
Length
88 bp
Sequences
Splice sites
3' ss Seq
ACCAGCCTCCGGTCCTTCAGTTC
3' ss Score
5.89
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
TACCATTCCCAG
Seq A exon
TTCCGACAGGTCTCACACTCTGAGCCACGCATCGTACCTGAGGGACAGTGCCATGATCGACGACACGGTTGTGATCCCCAGCCACCAG
Seq C2 exon
GTGTCAGCCCTAGCCAAGGAGGCAGAAAGGAATTCTTATCGTCTGAGCTGGGGCACCGAGAACTTAGACAACGTGGCTCTTTCTTCCAGTCCTATTCATTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076-'67-53,'67-52,68-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.092 C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079115=ZU5=PU(1.0=2.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]