BtaEX6029974 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13447825-13450405:-
Coord C1 exon
chr6:13450378-13450405
Coord A exon
chr6:13448637-13448739
Coord C2 exon
chr6:13447825-13447928
Length
103 bp
Sequences
Splice sites
3' ss Seq
ACCTCCTGCCAACCTACCAGCCT
3' ss Score
3.22
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CATTTACTTTGGGGCATAGATCCTACAG
Seq A exon
CCTTCGATCCTTCAGTTCCGACAGGTCTCACACCCTGAGCCATGCCTCGTACCTGAGGGACAGTGCCATGATCGACGACGCAGTTGTGATCCCCAGTCACCAG
Seq C2 exon
GTGACAACTCTAGCCAAGGAGGCAGAAAGGAATTCTTATCGTCTAAGCTGGGGCACTGAGAACTTGGACAACGTGGCTCTTTCTTCCAGCCCTATTCATTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392-'64-67,'64-65,68-67=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.019 C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079115=ZU5=PU(1.0=2.9)
Main Skipping Isoform:
ENSBTAT00000063062fB555
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTACTTTGGGGCATAGATCCT
R:
CCTGAATGAATAGGGCTGGAAGA
Band lengths:
132-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]