DreEX0013086 @ danRer10
Exon Skipping
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57651674-57654115:-
Coord C1 exon
chr7:57653974-57654115
Coord A exon
chr7:57651911-57651922
Coord C2 exon
chr7:57651674-57651740
Length
12 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTAATGCTGACATAGTCG
3' ss Score
1.97
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GTGATGACACTATGACAGGTGATGGTGGTGAATATTTGAGAGCAGAGGATTTGAGAGAATTAGGAGATGATTCACTACCTGGCCAGTACCTGGATGGCATGAACTACCTGCGGTTCAGTTTAGAAGGAGGCAGATCAGACAG
Seq A exon
TCGCCTACAGAG
Seq C2 exon
TTTGGACAGATCCTACACTCCCACCCACCAGAGTTACTACTCAAAACATTATGGAATTATGGAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=0.600 C2=0.254
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000147287fB1173
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTACCTGGCCAGTACCTG
R:
TAACTCTGGTGGGTGGGAGTG
Band lengths:
107-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]