BtaALTA0003523-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000001473 | ARVCF
Description
Bos taurus armadillo repeat gene deleted in velocardiofacial syndrome (ARVCF), mRNA. [Source:RefSeq mRNA;Acc:NM_001105380]
Coordinates
chr17:74931633-74932172:-
Coord C1 exon
chr17:74931974-74932172
Coord A exon
chr17:74931702-74931744
Coord C2 exon
chr17:74931633-74931701
Length
43 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TGATCCCGCCTGGGCCGCAGCCA
3' ss Score
3.67
Exon sequences
Seq C1 exon
GGAGCTACGCCATGGCCGAGCTTGTGAGAAACGTGCGCAGCGCGCAGGCGCCCGCCCGGCCCGGTGTCCGCCTGGAGGAGGACACAGTGGTGGCCGTGCTCAACACGATCCACGAGATCGTGTCCGACAGTCTGGACAACGCGCGCTCGCTGCTGCAAGCTCGCGGCGTGCCCGCGCTGGTGGCACTGGGCGCCTCCAG
Seq A exon
CCAATCGGTGCGCGAGGCGAAGGCCGCGTCGCACGTGCTGCAG
Seq C2 exon
ACCGTGTGGAGCTACAAGGAGCTGCGCAGCGCCCTCCAGAAGGACGGCTGGAGCAAGGCGCGCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001473-15-23,15-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCGACAGTCTGGACAAC
R:
CTTGCTCCAGCCGTCCTTCT
Band lengths:
137-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development