MmuALTA1000142-3/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000000325 | Arvcf
Description
armadillo repeat gene deleted in velo-cardio-facial syndrome [Source:MGI Symbol;Acc:MGI:109620]
Coordinates
chr16:18403326-18403739:+
Coord C1 exon
chr16:18403326-18403524
Coord A exon
chr16:18403628-18403670
Coord C2 exon
chr16:18403671-18403739
Length
43 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCTGGCTGCTGCTGCTGCAGCCA
3' ss Score
4.61
Exon sequences
Seq C1 exon
GGAGCTATGCCATGACAGAGCTGGTTCGGAATGTTCGCAATGCACAGGCTCCCGCTCACCCCAGTGCCCACCTGGAGGAGGATACTGTGGTTGCCGTGCTCAACACCATCCATGAGATCGTGTCCGACAGCCTGGACAATGCTCGCTCCCTCCTGCAGGCCCGTGGTGTGCCTGCCCTGGTAGCACTTGTGGCCTCCAG
Seq A exon
CCAGTCAGTGCGGGAGGCCAAGGCAGCATCACACGTGCTACAG
Seq C2 exon
ACTGTATGGAGCTACAAGGAGCTGCGTGGAGCCCTGCAGAGGGATGGCTGGACGAAGTCACGCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000325-34-39,34-38,34-37,34-36-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=NA C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATACTGTGGTTGCCGTGCTC
R:
CACGCAGCTCCTTGTAGCTC
Band lengths:
147-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types