RnoALTA0004687-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000001888 | Arvcf
Description
ARVCF, delta catenin family member [Source:RGD Symbol;Acc:1306655]
Coordinates
chr11:86738594-86739005:-
Coord C1 exon
chr11:86738807-86739005
Coord A exon
chr11:86738663-86738705
Coord C2 exon
chr11:86738594-86738662
Length
43 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCTGGCTGCTGCTGCTGTAGCCA
3' ss Score
3.87
Exon sequences
Seq C1 exon
GGAGCTACGCCATGACAGAGCTGGTTCGGAATGTTCGCAACGCACAGGCTCCTGCCCACCCCAGTGCCCACCTGGAGGAGGATACAGTGGTAGCTGTGCTCAACACCATCCATGAGATTGTGTCCGACAGCCTGGACAATGCTCGCTCCCTCCTGCAGGCCCGTGGTGTGCCTGCACTGGTGGCACTTGTGGCCTCCAG
Seq A exon
CCAGTCAGTGCGGGAGGCCAAGGCAGCATCACACGTGCTACAG
Seq C2 exon
ACTGTGTGGAGCTACAAGGAGCTGCGTGGAGCCCTACAGAGGGACGGCTGGACGAAAGCACACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001888-30-28,30-27,30-26,30-25-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=NA C2=0.132
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGGTAGCTGTGCTCAAC
R:
AGCTCCTTGTAGCTCCACACA
Band lengths:
139-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]