GgaALTA1005120-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002040 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:RefSeq peptide;Acc:NP_989796]
Coordinates
chr15:1058436-1059430:-
Coord C1 exon
chr15:1059238-1059430
Coord A exon
chr15:1058544-1058547
Coord C2 exon
chr15:1058436-1058543
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AATTTTATTTTGCAAATCAGCCA
3' ss Score
1.83
Exon sequences
Seq C1 exon
GTAGTTATGCCATGGGTGAGCTGGTTAGAAATTTGCCCAGCAGGCAGCAGAGATCTGCAAAGAACCTGGAAGAGGATACAGTGGTTGCTGTATTGAATACAATCCATGAAATCATTACTGACAGCTCAGAAAATGCAAGGTCTCTGATCCAGACACAGGGCATTCAGAAGCTGGTGGCTATCAGCAAGTCAAG
Seq A exon
CCAG
Seq C2 exon
TCTCCTCGAGAAACAAAAGCAGCGTCTCACGTTCTTCAGATGATCTGGAGCTACAAGGAGTTACGAAATGCTTTGCAGAAAGATGGCTGGAACAAATCACACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040-50-38,50-37-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGGGCATTCAGAAGCTG
R:
TCGTAACTCCTTGTAGCTCCAGA
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]