BtaALTA0004596-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011074 | BRD2
Description
Bos taurus bromodomain containing 2 (BRD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045866]
Coordinates
chr23:7245200-7245836:+
Coord C1 exon
chr23:7245200-7245451
Coord A exon
chr23:7245571-7245580
Coord C2 exon
chr23:7245581-7245836
Length
10 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TGTTTCTGTTTTCTCTCAAGCTT
3' ss Score
8.31
Exon sequences
Seq C1 exon
GATGTATTTGAGTTCCGTTATGCCAAAATGCCAGATGAACCACTGGAACCAGGGCCTTTACCAGTCTCTACTGCCTTGCCCCCTGGCTTGGCCAAGTCATCTTCAGAGTCCTCCAGCGAGGAAAGTAGCAGTGAGAGTTCTTCTGAGGAAGAGGAGGAGGAAGATGAGGACGAGGAGGAGGAGGAAGAAGAAAGTGAGAGCTCTGACTCTGAGGAAGAAAGGGCTCATCGCTTGGCTGAACTACAGGAACAG
Seq A exon
CTTAGAGCAG
Seq C2 exon
TACATGAACAACTGGCTGCCTTGTCCCAAGGCCCAATATCCAAGCCCAAGCGAAAGAGAGAGAAAAAAGAGAAAAAGAAGAAACGGAAGGCAGAGAAGCATCGAGGCCGAGCTGGGGCTGATGAAGATGACAAAGGCCCTCGAGCACCCCGCCCGTCTCAGCCCAAGAAGTCCAAGAAGGCGGGTGGCGGTGGGAGCAGTGGCGCTGCTACTCTGGGTCCCCCTGGCTTTGGGCCTTCTGGAGGAGGGGCCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011074-16-16,16-15,16-14-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF090735=BUD22=FE(25.6=100)
A:
NA
C2:
PF090735=BUD22=FE(27.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAAGGGCTCATCGCTTGG
R:
CTCTTTCGCTTGGGCTTGGAT
Band lengths:
96-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development