MmuALTA1012269-2/2 @ mm10

Alternative 3'ss

Gene

ENSMUSG00000024335 | Brd2

Description

bromodomain containing 2 [Source:MGI Symbol;Acc:MGI:99495]

Coordinates

chr17:34113796-34114177:-

Coord C1 exon

chr17:34113932-34114177

Coord A exon

chr17:34113823-34113832

Coord C2 exon

chr17:34113796-34113822

Length

10 bp

Sequences

Splice sites

5' ss Seq

CAGGTAGAT

5' ss Score

7.25

3' ss Seq

TTCACCTTTTTCCTGTATAGCTT

3' ss Score

9.81

Exon sequences

Seq C1 exon

GATGTGTTTGAGTTTCGCTATGCCAAGATGCCAGATGAGCCACTGGAACCAGGACCTCTACCAGTCTCTACTGCCTTGCCTCCTGGGTTGACCAAATCCTCTTCAGAGTCCTCCAGTGAGGAAAGTAGCAGTGAGAGTTCCTCTGAGGAAGAGGAGGAGGAGGAAGAAGATGAGGACGAGGAGGAGAGTGAAAGCTCAGACTCTGAGGAGGAAAGGGCTCATCGCCTAGCAGAGCTGCAGGAGCAG

Seq A exon

CTTCGGGCAG

Seq C2 exon

TTCATGAACAACTGGCTGCCCTGTCCC

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000024335-35-34,35-33-2/2

Average complexity

Alt3

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.900 A=NA C2=1.000

Domain overlap (PFAM):

C1:

PF0043920=Bromodomain=PD(30.2=15.7),PF062846=Cytomega_UL84=FE(71.3=100),PF060886=TLP-20=FE(78.8=100),PF0105613=Myc_N=PU(82.0=98.8),PF045468=Sigma70_ner=PU(72.7=77.1)

A:

NA

C2:

PF062846=Cytomega_UL84=PD(3.5=16.0),PF060886=TLP-20=PD(9.6=40.0),PF0105613=Myc_N=PD(17.0=68.0),PF045468=Sigma70_ner=PD(26.1=92.0)

Main Inclusion Isoform:

ENSMUSP00000025193