HsaALTA0000980-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000204256 | BRD2
Description
bromodomain containing 2 [Source:HGNC Symbol;Acc:HGNC:1103]
Coordinates
chr6:32977757-32978197:+
Coord C1 exon
chr6:32977757-32978005
Coord A exon
chr6:32978126-32978164
Coord C2 exon
chr6:32978165-32978197
Length
39 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TCATGTTTTTTTTCCTTTAGCTT
3' ss Score
9.36
Exon sequences
Seq C1 exon
GATGTATTTGAGTTCCGTTATGCCAAGATGCCAGATGAACCACTAGAACCAGGGCCTTTACCAGTCTCTACTGCCATGCCCCCTGGCTTGGCCAAATCGTCTTCAGAGTCCTCCAGTGAGGAAAGTAGCAGTGAGAGCTCCTCTGAGGAAGAGGAGGAGGAAGATGAGGAGGACGAGGAGGAAGAAGAGAGTGAAAGCTCAGACTCAGAGGAAGAAAGGGCTCATCGCTTAGCAGAACTACAGGAACAG
Seq A exon
CTTCGGGCAGTACATGAACAACTGGCTGCTCTGTCCCAG
Seq C2 exon
GGTCCAATATCCAAGCCCAAGAGGAAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204256-35-35,35-34-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.890 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF062137=CobT=FE(55.4=100),PF045468=Sigma70_ner=PU(70.0=75.9)
A:
NA
C2:
PF062137=CobT=PD(5.4=30.8),PF045468=Sigma70_ner=FE(27.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAGGAGGACGAGGAGGA
R:
CTCTTTTCCTCTTGGGCTTGGA
Band lengths:
119-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development