HsaALTA0000980-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000204256 | BRD2
Description
bromodomain containing 2 [Source:HGNC Symbol;Acc:1103]
Coordinates
chr6:32945534-32945974:+
Coord C1 exon
chr6:32945534-32945782
Coord A exon
chr6:32945903-32945941
Coord C2 exon
chr6:32945942-32945974
Length
39 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TCATGTTTTTTTTCCTTTAGCTT
3' ss Score
9.36
Exon sequences
Seq C1 exon
GATGTATTTGAGTTCCGTTATGCCAAGATGCCAGATGAACCACTAGAACCAGGGCCTTTACCAGTCTCTACTGCCATGCCCCCTGGCTTGGCCAAATCGTCTTCAGAGTCCTCCAGTGAGGAAAGTAGCAGTGAGAGCTCCTCTGAGGAAGAGGAGGAGGAAGATGAGGAGGACGAGGAGGAAGAAGAGAGTGAAAGCTCAGACTCAGAGGAAGAAAGGGCTCATCGCTTAGCAGAACTACAGGAACAG
Seq A exon
CTTCGGGCAGTACATGAACAACTGGCTGCTCTGTCCCAG
Seq C2 exon
GGTCCAATATCCAAGCCCAAGAGGAAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204256-17-27,17-26-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.890 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF090735=BUD22=FE(25.5=100)
A:
NA
C2:
PF090735=BUD22=FE(27.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAGGAGGACGAGGAGGA
R:
CTCTTTTCCTCTTGGGCTTGGA
Band lengths:
119-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)