BtaALTA0007264-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7816142-7823638:-
Coord C1 exon
chr22:7823410-7823638
Coord A exon
chr22:7816303-7816335
Coord C2 exon
chr22:7816142-7816302
Length
33 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
ACATCATGTCCATATGACAGATC
3' ss Score
5.4
Exon sequences
Seq C1 exon
ATGTGTGGCGGCCCTGGGATGTCTGATCCAAGAGCAGGAGGTGATGCTACTGACTCAAGCCAAACAGCCCTTGATAATAAGGCTTCACTGCTCCATTCAATGCCTGCTCACTCCTCTCCACGCTCTCGAGACTATAATCCATATAACTATTCAGATAGCATCAGTCCCTTCAACAAGTCTGCCCTCAAGGAAGCCATGTTTGATGATGATGCTGACCAGTTTCCTGATG
Seq A exon
ATCTTTCCCTAGACCATTCTGACCTGGTTGCAG
Seq C2 exon
AGTTGTTGAAAGAGTTGTCTAACCATAATGAACGTGTAGAAGAAAGAAAAATCGCCCTGTATGAACTCATGAAACTGACACAGGAAGAATCTTTCAGTGTTTGGGATGAACACTTCAAAACGATATTACTTTTATTGCTTGAAACCCTTGGGGATAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333-52-55,52-54,52-53-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF127172=Cnd1=PU(0.5=1.3)
A:
NA
C2:
PF127172=Cnd1=FE(32.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTCAAGGAAGCCATGTTT
R:
TCATGAGTTCATACAGGGCGA
Band lengths:
121-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development