HsaALTA1040500-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000163539 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr3:33516981-33535461:-
Coord C1 exon
chr3:33535233-33535461
Coord A exon
chr3:33517163-33517174
Coord C2 exon
chr3:33516981-33517162
Length
12 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGT
5' ss Score
9.94
3' ss Seq
ATACCATGTCCTTTTGACAGATC
3' ss Score
9.2
Exon sequences
Seq C1 exon
ATGTGTGGTGGTCCTGGGATGTCTGACCCAAGAGCAGGAGGTGATGCTACTGACTCAAGTCAAACAGCTCTTGATAATAAAGCTTCATTGCTCCATTCAATGCCTACTCACTCCTCTCCACGCTCTCGAGACTATAATCCATATAACTATTCAGATAGCATCAGTCCCTTCAACAAGTCTGCCCTCAAGGAAGCCATGTTTGATGATGATGCTGACCAGTTTCCTGACG
Seq A exon
ATCTTTCCCTAG
Seq C2 exon
ATCATTCTGACCTAGTTGCAGAGTTGTTGAAGGAGCTGTCTAACCATAATGAGCGTGTAGAAGAAAGAAAAATTGCCCTCTATGAACTTATGAAACTGACACAGGAAGAATCTTTTAGTGTTTGGGATGAACACTTCAAAACAATATTGCTTTTATTGCTTGAAACGCTTGGAGATAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163539-107-132,107-131-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.991 A=NA C2=0.309
Domain overlap (PFAM):
C1:
PF127172=Cnd1=PU(0.5=1.3)
A:
NA
C2:
PF127172=Cnd1=PU(59.6=98.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCAACAAGTCTGCCCTC
R:
CAGCTCCTTCAACAACTCTGCA
Band lengths:
102-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains