MmuALTA0004189-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113815115-113817998:+
Coord C1 exon
chr9:113815115-113815343
Coord A exon
chr9:113817805-113817837
Coord C2 exon
chr9:113817838-113817998
Length
33 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
ATATTATATTCTTTTGACAGATC
3' ss Score
8.94
Exon sequences
Seq C1 exon
ATATGTAGTGGTCCTGGGATGTCAGATCCAAGAGCAGGAGGTGATGCTGCTGACGGCAGCCAGCCAGCTCTGGATAATAAAGCATCGTTGCTCCACTCAATGCCACTCCACTCCTCTCCACGCTCCCGTGACTATAACCCATATAACTACTCAGATAGCATCAGTCCTTTCAACAAGTCTGCCCTCAAGGAAGCCATGTTTGATGATGACGCCGACCAATTTCCTGATG
Seq A exon
ATCTTTCCTTAGACCATTCTGACCTAGTTGCAG
Seq C2 exon
AGTTGTTGAAGGAGCTGTCTAATCATAATGAACGTATAGAAGAAAGAAAAATTGCCCTGTATGAACTCATGAAGCTAACCCAGGAAGAATCTTTCAGTGTTTGGGATGAACACTTCAAAACAATATTATTGTTATTGCTTGAGACCCTTGGGGATAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392-49-51,49-50-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.443
Domain overlap (PFAM):
C1:
PF127172=Cnd1=PU(0.5=1.3)
A:
NA
C2:
PF127172=Cnd1=FE(22.7=100),PF126123=TFCD_C=PU(10.4=35.2)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTCAAGGAAGCCATGTTT
R:
GCTTCATGAGTTCATACAGGGCA
Band lengths:
124-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: