GgaALTA0006323-3/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000011995 | CLASP2
Description
NA
Coordinates
chr2:44708092-44712902:-
Coord C1 exon
chr2:44712680-44712902
Coord A exon
chr2:44708253-44708285
Coord C2 exon
chr2:44708092-44708252
Length
33 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
ATACATTCCTTTTTTGATAGAAC
3' ss Score
4.64
Exon sequences
Seq C1 exon
ATTGGCAGTGCTTCTGGAATAGCAGACCTACGAGCAGGAAGTGGTATAAGTGATACAGGCCGAACAGCTCTTGATAACAAAACATCATTACTCAACACAATGCCTCCTCACTCTTCACCACGCTCACGAGATTATAACCCATACAATTATTCTGATAGTTCGTTTAATAAATCTGCTTTGAAGGAAGCCATGTTTGATGATGATGCAGAGCAGTTTCCTGATG
Seq A exon
AACCTCCCATGGATCATTCTGATCTAGTTGCAG
Seq C2 exon
AGTTACTAAAAGAGTTATCAAACCATAACGAGAGAGTCGAGGAGAGAAAGGCTGCCCTGTATGAGCTCATGAAGTTAACTCAAGAAGAGTCTTTTGGTGTTTGGGATGAGCACTTCAAAACAATACTGCTTTTGCTGCTTGAAACACTTGGAGACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995-63-69,63-68,63-67-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.262
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGAAGGAAGCCATGTTTGA
R:
CATGAGCTCATACAGGGCAGC
Band lengths:
120-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]