BtaALTA0007368-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000014393 | CLK2
Description
CDC-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:2069]
Coordinates
chr3:15424538-15425680:+
Coord C1 exon
chr3:15424538-15424707
Coord A exon
chr3:15425452-15425454
Coord C2 exon
chr3:15425455-15425680
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GGATGTGTGTTGTCCAACAGCAG
3' ss Score
6.03
Exon sequences
Seq C1 exon
ATGCCTCATCCTCGAAGGTACCACTCTTCTGAGAGAGGCAGCAGAGGGAGTTACCACGAGCATTATCGGAGCCGAAAGCATAAGCGACGAAGAAGCCGCTCCTGGTCAAGCAGCAGTGACCGTACGCGGCGGCGCCGACGGGAAGACAGTTACCATGTCCGTTCCCGAAG
Seq A exon
CAG
Seq C2 exon
CTATGATGATCGTTCATCCGATCGGAGGGCGTATGACCGGCGATACTGTGGCAGCTACAGGCGCAACGACTACAGCCGAGATCGGGGAGAAGCCTACTATGACACAGACTACCGGCATTCCTATGAGTACCATCGGGAGAACAGCAGTTACCGCAGCCAGCGCAGCAGCCGTAGGAAGCACCGACGGCGGAGACGGCGCAGCCGGACATTCAGCCGTTCGTCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014393-7-4,7-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTACCATGTCCGTTCCCG
R:
CTGTAGTCGTTGCGCCTGTAG
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development