RnoALTA0009273-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000020500 | Clk2
Description
CDC-like kinase 2 [Source:RGD Symbol;Acc:1359711]
Coordinates
chr2:188479032-188481205:+
Coord C1 exon
chr2:188479032-188479201
Coord A exon
chr2:188480977-188481033
Coord C2 exon
chr2:188481034-188481205
Length
57 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GGGTACTTATTATCCAACAGCAG
3' ss Score
4.21
Exon sequences
Seq C1 exon
ATGCCTCATCCCCGAAGGTACCATTCCTCAGAGAGAGGTAGCCGGGGAAGTTACCACGAGCACTATCGGAGCCGAAAACATAAGCGAAGAAGAAGTCGCTCCTGGTCAAGTACCAGTGACCGGACAAGGCGGCGGCGGAGGGAGGATAGCTACCATGTTCGGTCTCGAAG
Seq A exon
CAGCTATGACGATCATTCATCTGACCGGCGGCTATACGATCGACGATACTGTGGCAG
Seq C2 exon
CTACAGGCGCAATGACTACAGCCGGGATAGAGGAGAGGCCTACTATGACACAGACTTTCGGCATTCCTATGAATACCATCGAGAGAACAGCAGTTACCGAAGCCAGCGCAGCAGCCGCCGGAAACCCAGACGGCGGAGAAGACGTAGCAGAACATTCAGCCACTCATCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020500-3-6,3-5,3-4,3-3-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.578
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCCGAAAACATAAGCGA
R:
GTAGGCCTCTCCTCTATCCCG
Band lengths:
147-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]